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With the prevalence of online platforms, today, data is being generated and accessed by users at a very high rate. Besides, applications such as stock trading or high frequency trading require guaranteed low delays for performing an…

Databases · Computer Science 2020-03-03 Sepanta Zeighami , Raymond Chi-Wing Wong

In this paper, we revisit the question of how the dynamic optimality of search trees should be defined in external memory. A defining characteristic of external-memory data structures is that there is a stark asymmetry between queries and…

Data Structures and Algorithms · Computer Science 2022-04-22 Michael A. Bender , Martín Farach-Colton , William Kuszmaul

Modern key-value stores rely heavily on Log-Structured Merge (LSM) trees for write optimization, but this design introduces significant read amplification. Auxiliary structures like Bloom filters help, but impose memory costs that scale…

Data Structures and Algorithms · Computer Science 2025-08-05 Nicholas Fidalgo , Puyuan Ye

We propose an extension of tree-based space-partitioning indexing structures for data with low intrinsic dimensionality embedded in a high dimensional space. We call this extension an Angle Tree. Our extension can be applied to both…

Data Structures and Algorithms · Computer Science 2010-04-19 Ilia Zvedeniouk , Sanjay Chawla

Recent retrieval-augmented models enhance basic methods by building a hierarchical structure over retrieved text chunks through recursive embedding, clustering, and summarization. The most relevant information is then retrieved from both…

Computation and Language · Computer Science 2024-10-03 Charbel Chucri , Rami Azouz , Joachim Ott

While modern biotechnologies allow synthesizing new proteins and function measurements at scale, efficiently exploring a protein sequence space and engineering it remains a daunting task due to the vast sequence space of any given protein.…

Biomolecules · Quantitative Biology 2024-01-15 Jiahao Qiu , Hui Yuan , Jinghong Zhang , Wentao Chen , Huazheng Wang , Mengdi Wang

It is widely assumed that $O(m+\lg \sigma)$ is the best one can do for finding a pattern of length $m$ in a compacted trie storing strings over an alphabet of size $\sigma$, if one insists on linear-size data structures and deterministic…

Data Structures and Algorithms · Computer Science 2013-02-15 Johannes Fischer , Pawel Gawrychowski

We consider an index data structure for similar strings. The generalized suffix tree can be a solution for this. The generalized suffix tree of two strings $A$ and $B$ is a compacted trie representing all suffixes in $A$ and $B$. It has…

Data Structures and Algorithms · Computer Science 2013-05-09 Joong Chae Na , Heejin Park , Maxime Crochemore , Jan Holub , Costas S. Iliopoulos , Laurent Mouchard , Kunsoo Park

The dynamic trees problem is to maintain a forest subject to edge insertions and deletions while facilitating queries such as connectivity, path weights, and subtree weights. Dynamic trees are a fundamental building block of a large number…

Data Structures and Algorithms · Computer Science 2020-10-27 Umut A. Acar , Daniel Anderson , Guy E. Blelloch , Laxman Dhulipala , Sam Westrick

In this paper we present novel algorithmic techniques with a O(H(N)+N/H(N)) time complexity for performing several types of queries and updates on general rooted trees, binary search trees and lists of size N. For rooted trees we introduce…

Data Structures and Algorithms · Computer Science 2013-03-25 Mugurel Ionut Andreica

Decision tree learning is a widely used approach in machine learning, favoured in applications that require concise and interpretable models. Heuristic methods are traditionally used to quickly produce models with reasonably high accuracy.…

Variant Stochastic cracking is a significantly more resilient approach to adaptive indexing. It showed [1]that Stochastic cracking uses each query as a hint on how to reorganize data, but not blindly so; it gains resilience and avoids…

Databases · Computer Science 2013-05-09 Meenesh Bhardwaj

Modern highly-concurrent search data structures, such as search trees, obtain multi-core scalability and performance by having operations traverse the data structure without any synchronization. As a result, however, these algorithms are…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-12 Yotam M. Y. Feldman , Artem Khyzha , Constantin Enea , Adam Morrison , Aleksandar Nanevski , Noam Rinetzky , Sharon Shoham

This paper presents a novel approach to enhance the Binary-Addition-Tree algorithm (BAT) by integrating incremental learning techniques. BAT, known for its simplicity in development, implementation, and application, is a powerful implicit…

Machine Learning · Computer Science 2024-09-25 Wei-Chang Yeh

Finding the shortest-path distance between two arbitrary vertices is an important problem in road networks. Due to real-time traffic conditions, road networks undergo dynamic changes all the time. Current state-of-the-art methods…

Data Structures and Algorithms · Computer Science 2025-01-30 Henning Koehler , Muhammad Farhan , Qing Wang

The rise of machine learning methods on heavily resource constrained devices requires not only the choice of a suitable model architecture for the target platform, but also the optimization of the chosen model with regard to execution time…

Machine Learning · Computer Science 2024-06-19 Lena Schmid , Daniel Biebert , Christian Hakert , Kuan-Hsun Chen , Michel Lang , Markus Pauly , Jian-Jia Chen

Recent advancements in large language models (LLMs) have shown remarkable potential in various complex tasks requiring multi-step reasoning methods like tree search to explore diverse reasoning paths. However, existing methods often suffer…

Artificial Intelligence · Computer Science 2025-06-10 Sungjae Lee , Hyejin Park , Jaechang Kim , Jungseul Ok

For text retrieval systems, the assumption that all data structures reside in main memory is increasingly common. In this context, we present a novel incremental inverted indexing algorithm for web-scale collections that directly constructs…

Information Retrieval · Computer Science 2013-05-06 Nima Asadi , Jimmy Lin

Using (a,b)-trees as an example, we show how to perform a parallel split with logarithmic latency and parallel join, bulk updates, intersection, union (or merge), and (symmetric) set difference with logarithmic latency and with information…

Data Structures and Algorithms · Computer Science 2016-05-12 Yaroslav Akhremtsev , Peter Sanders

The tree is an essential data structure in many applications. In a distributed application, such as a distributed file system, the tree is replicated.To improve performance and availability, different clients should be able to update their…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-20 Sreeja Nair , Filipe Meirim , Mário Pereira , Carla Ferreira , Marc Shapiro