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Data movement is the dominating factor affecting performance and energy in modern computing systems. Consequently, many algorithms have been developed to minimize the number of I/O operations for common computing patterns. Matrix…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-26 Johannes de Fine Licht , Grzegorz Kwasniewski , Torsten Hoefler

Modular reduction is a crucial operation in many post-quantum cryptographic schemes, including the Kyber key exchange method or Dilithium signature scheme. However, it can be computationally expensive and pose a performance bottleneck in…

Cryptography and Security · Computer Science 2023-08-30 Robin Müller , Willi Meier , Christoph F. Wildfeuer

This paper presents an accelerated quadrature scheme for the evaluation of layer potentials in three dimensions. Our scheme combines a generic, high order quadrature method for singular kernels called Quadrature by Expansion (QBX) with a…

Numerical Analysis · Mathematics 2019-04-01 Matt Wala , Andreas Klöckner

Like the letters in the alphabet forming words, reusing components of a heterogeneous mixture is an efficient strategy for assembling a large number of target structures. Examples range from synthetic DNA origami to proteins self-assembling…

Statistical Mechanics · Physics 2024-12-10 Félix Benoist , Pablo Sartori

Sparse matrix-matrix multiplication (SpGEMM) is a computational primitive that is widely used in areas ranging from traditional numerical applications to recent big data analysis and machine learning. Although many SpGEMM algorithms have…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-27 Yusuke Nagasaka , Satoshi Matsuoka , Ariful Azad , Aydın Buluç

The kernel $k$-means is an effective method for data clustering which extends the commonly-used $k$-means algorithm to work on a similarity matrix over complex data structures. The kernel $k$-means algorithm is however computationally very…

Machine Learning · Computer Science 2014-01-30 Ahmed Elgohary , Ahmed K. Farahat , Mohamed S. Kamel , Fakhri Karray

A major challenge in next-generation genome sequencing (NGS) is to assemble massive overlapping short reads that are randomly sampled from DNA fragments. To complete assembling, one needs to finish a fundamental task in many leading…

Genomics · Quantitative Biology 2015-05-26 Yang Li , XifengYan

Triangles are the basic substructure of networks and triangle counting (TC) has been a fundamental graph computing problem in numerous fields such as social network analysis. Nevertheless, like other graph computing problems, due to the…

Hardware Architecture · Computer Science 2021-12-02 Xueyan Wang , Jianlei Yang , Yinglin Zhao , Xiaotao Jia , Rong Yin , Xuhang Chen , Gang Qu , Weisheng Zhao

Electronic structure calculations of molecular systems are among the most promising applications for fault-tolerant quantum computing (FTQC) in quantum chemistry and drug design. However, while recent algorithmic advancements such as…

There is a growing interest in custom spatial accelerators for machine learning applications. These accelerators employ a spatial array of processing elements (PEs) interacting via custom buffer hierarchies and networks-on-chip. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-22 Gordon E. Moon , Hyoukjun Kwon , Geonhwa Jeong , Prasanth Chatarasi , Sivasankaran Rajamanickam , Tushar Krishna

Although deep learning-based personalized recommendation systems provide qualified recommendations, they strain data center resources. The main bottleneck is the embedding layer, which is highly memory-intensive due to its sparse, irregular…

Hardware Architecture · Computer Science 2025-11-26 Youngsuk Kim , Junghwan Lim , Hyuk-Jae Lee , Chae Eun Rhee

In-memory database query processing frequently involves substantial data transfers between the CPU and memory, leading to inefficiencies due to Von Neumann bottleneck. Processing-in-Memory (PIM) architectures offer a viable solution to…

Recent advances in deep learning (DL) have led to a shift from traditional 64-bit floating point (FP64) computations toward reduced-precision formats, such as FP16, BF16, and 8- or 16-bit integers, combined with mixed-precision arithmetic.…

Computation and Language · Computer Science 2025-06-16 Héctor Martínez , Adrián Castelló , Francisco D. Igual , Enrique S. Quintana-Ortí

Symmetric nonnegative matrix factorization (SymNMF) has important applications in data analytics problems such as document clustering, community detection and image segmentation. In this paper, we propose a novel nonconvex variable…

Optimization and Control · Mathematics 2017-03-27 Songtao Lu , Mingyi Hong , Zhengdao Wang

k-means is one of the most influential and utilized machine learning algorithms. Its computation limits the performance and scalability of many statistical analysis and machine learning tasks. We rethink and optimize k-means in terms of…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-27 Disa Mhembere , Da Zheng , Carey E. Priebe , Joshua T. Vogelstein , Randal Burns

Versatile Video Coding (VVC) has significantly increased encoding efficiency at the expense of numerous complex coding tools, particularly the flexible Quad-Tree plus Multi-type Tree (QTMT) block partition. This paper proposes a deep…

Image and Video Processing · Electrical Eng. & Systems 2023-04-07 Zhao Zan , Leilei Huang , ShuShi Chen , Xiantao Zhang , Zhenghui Zhao , Haibing Yin , Yibo Fan

Low-precision computing is essential for efficiently utilizing memory bandwidth and computing cores. While many mixed-precision algorithms have been developed for iterative sparse linear solvers, effectively leveraging half-precision (fp16)…

Numerical Analysis · Mathematics 2025-05-28 Kengo Suzuki , Takeshi Iwashita

This research explores the use of superconductor electronics (SCE) for accelerating fully homomorphic encryption (FHE), focusing on the Number-Theoretic Transform (NTT), a key computational bottleneck in FHE schemes. We present SCE-NTT, a…

k-Nearest-Neighbor Machine Translation (kNN-MT) has been recently proposed as a non-parametric solution for domain adaptation in neural machine translation (NMT). It aims to alleviate the performance degradation of advanced MT systems in…

Computation and Language · Computer Science 2022-05-04 Dexin Wang , Kai Fan , Boxing Chen , Deyi Xiong

The sparse matrix-vector (SpMV) multiplication is an important computational kernel, but it is notoriously difficult to execute efficiently. This paper investigates algorithm performance for unstructured sparse matrices, which are more…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-27 Kobe Bergmans , Karl Meerbergen , Raf Vandebril
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