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Counting small subgraphs, referred to as motifs, in large graphs is a fundamental task in graph analysis, extensively studied across various contexts and computational models. In the sublinear-time regime, the relaxed problem of approximate…

Data Structures and Algorithms · Computer Science 2025-03-14 Talya Eden , Reut Levi , Dana Ron , Ronitt Rubinfeld

Time series classification is an important analytical task across diverse domains. However, its practical application is often hindered by the scarcity of labeled data and the requirement for substantial computational resources. To address…

Machine Learning · Computer Science 2026-04-29 Xuanhao Yang , Bing Xue , Mengjie Zhang

Many real-world systems, such as social networks, rely on mining efficiently large graphs, with hundreds of millions of vertices and edges. This volume of information requires partitioning the graph across multiple nodes in a distributed…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-09-11 Luis Vaquero , Felix Cuadrado , Dionysios Logothetis , Claudio Martella

Highly parallelized workloads like machine learning training, inferences and general HPC tasks are greatly accelerated using GPU devices. In a cloud computing cluster, serving a GPU's computation power through multi-tasks sharing is highly…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-05 Wenqing Wu

Various parallelism, such as data, tensor, and pipeline parallelism, along with memory optimizations like activation checkpointing, redundancy elimination, and offloading, have been proposed to accelerate distributed training for Large…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-26 Zhanda Zhu , Christina Giannoula , Muralidhar Andoorveedu , Qidong Su , Karttikeya Mangalam , Bojian Zheng , Gennady Pekhimenko

Temporal action recognition always depends on temporal action proposal generation to hypothesize actions and algorithms usually need to process very long video sequences and output the starting and ending times of each potential action in…

Computer Vision and Pattern Recognition · Computer Science 2022-03-21 Tian Wang , Shiye Lei , Youyou Jiang , Choi Chang , Hichem Snoussi , Guangcun Shan

Similarity search is one of the most fundamental computations that are regularly performed on ever-increasing protein datasets. Scalability is of paramount importance for uncovering novel phenomena that occur at very large scales. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-06 Oguz Selvitopi , Saliya Ekanayake , Giulia Guidi , Muaaz G. Awan , Georgios A. Pavlopoulos , Ariful Azad , Nikos Kyrpides , Leonid Oliker , Katherine Yelick , Aydın Buluç

Effective performance profiling and analysis are essential for optimizing training and inference of deep learning models, especially given the growing complexity of heterogeneous computing environments. However, existing tools often lack…

Performance · Computer Science 2024-11-06 Qidong Zhao , Hao Wu , Yuming Hao , Zilingfeng Ye , Jiajia Li , Xu Liu , Keren Zhou

Optimizing the parallel training of large models requires exploring intra-operator parallelism plans for a computation graph that typically contains tens of thousands of primitive operators. While the optimization of parallel data…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-08 Weifang Hu , Xuanhua Shi , Yunkai Zhang , Chang Wu , Xuan Peng , Jiaqi Zhai , Hai Jin , Xuehai Qian , Jingling Xue , Yongluan Zhou

Large Language Models (LLMs) with the Mixture-of-Experts (MoE) architectures have shown promising performance on various tasks. However, due to the huge model sizes, running them in resource-constrained environments where the GPU memory is…

Machine Learning · Computer Science 2025-05-02 Keisuke Kamahori , Tian Tang , Yile Gu , Kan Zhu , Baris Kasikci

Graph neural networks (GNNs) start to gain momentum after showing significant performance improvement in a variety of domains including molecular science, recommendation, and transportation. Turning such performance improvement of GNNs into…

Hardware Architecture · Computer Science 2021-07-20 Zhihui Zhang , Jingwen Leng , Shuwen Lu , Youshan Miao , Yijia Diao , Minyi Guo , Chao Li , Yuhao Zhu

As the need for computational power and efficiency rises, parallel systems become increasingly popular among various scientific fields. While multiple core-based architectures have been the center of attention for many years, the rapid…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-11 E. I. Ioannidis , N. Cheimarios , A. N. Spyropoulos , A. G. Boudouvis

This paper studies rule-based blocking in Entity Resolution (ER). We propose HyperBlocker, a GPU-accelerated system for blocking in ER. As opposed to previous blocking algorithms and parallel blocking solvers, HyperBlocker employs a…

Databases · Computer Science 2024-12-16 Xiaoke Zhu , Min Xie , Ting Deng , Qi Zhang

Sequence discovery tools play a central role in several fields of computational biology. In the framework of Transcription Factor binding studies, motif finding algorithms of increasingly high performance are required to process the big…

Quantitative Methods · Quantitative Biology 2014-08-27 Nicolò Colombo , Nikos Vlassis

Structural clustering is one of the most popular graph clustering methods, which has achieved great performance improvement by utilizing GPUs. Even though, the state-of-the-art GPU-based structural clustering algorithm, GPUSCAN, still…

Databases · Computer Science 2023-12-01 Long Yuan , Zeyu Zhou , Xuemin Lin , Zi Chen , Xiang Zhao , Fan Zhang

Modeling evolving interactions among entities is critical in many real-world tasks. For example, predicting driver maneuvers in traffic requires tracking how neighboring vehicles accelerate, brake, and change lanes relative to one another…

Artificial Intelligence · Computer Science 2025-09-23 Osama Mohammed , Jiaxin Pan , Mojtaba Nayyeri , Daniel Hernández , Steffen Staab

Memory profiling captures programs' dynamic memory behavior, assisting programmers in debugging, tuning, and enabling advanced compiler optimizations like speculation-based automatic parallelization. As each use case demands its unique…

Performance · Computer Science 2023-11-07 Ziyang Xu , Yebin Chon , Yian Su , Zujun Tan , Sotiris Apostolakis , Simone Campanoni , David I. August

Compared to frequent pattern mining, sequential pattern mining emphasizes the temporal aspect and finds broad applications across various fields. However, numerous studies treat temporal events as single time points, neglecting their…

Databases · Computer Science 2025-07-18 Shuang Liang , Lili Chen , Wensheng Gan , Philip S. Yu , Shengjie Zhao

This paper introduces an innovative approach to boost the efficiency and scalability of Evolutionary Rule-based machine Learning (ERL), a key technique in explainable AI. While traditional ERL systems can distribute processes across…

Neural and Evolutionary Computing · Computer Science 2025-05-27 Hormoz Shahrzad , Risto Miikkulainen

Breadth-First Search (BFS) is a fundamental graph kernel that underpins a wide range of applications. While modern GPUs provide specialised Matrix-Multiply-Accumulate (MMA) units, e.g., Tensor Cores (TC), with extremely high throughput,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-29 Deniz Elbek , Kamer Kaya