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There has been much progress in data-driven artificial intelligence technology for medical image analysis in the last decades. However, it still remains challenging due to its distinctive complexity of acquiring and annotating image data,…
Knowledge transfer from a complex high performing model to a simpler and potentially low performing one in order to enhance its performance has been of great interest over the last few years as it finds applications in important problems…
Techniques for concept extraction, such as sparse autoencoders and transcoders, aim to extract high-level symbolic concepts from low-level nonsymbolic representations. When these extracted concepts are used for downstream tasks such as…
In this paper, we propose a generalizable knowledge framework for data abstraction, i.e. finding compact abstract model for input data using predefined abstract terms. Based on these abstract terms, intelligent autonomous systems, such as a…
The goal of case-based retrieval is to assist physicians in the clinical decision making process, by finding relevant medical literature in large archives. We propose a research that aims at improving the effectiveness of case-based…
Automated medical coding, an essential task for healthcare operation and delivery, makes unstructured data manageable by predicting medical codes from clinical documents. Recent advances in deep learning and natural language processing have…
Knowledge-based Visual Question Answering (KB-VQA) requires models to answer questions by integrating visual information with external knowledge. However, retrieved knowledge is often noisy, partially irrelevant, or misaligned with the…
Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…
To reduce the large amount of time spent screening, identifying, and recruiting patients into clinical trials, we need prescreening systems that are able to automate the data extraction and decision-making tasks that are typically relegated…
With the exponential increase in online scientific literature, identifying reliable domain-specific data has become increasingly important but also very challenging. Manual data collection and filtering for domain-specific scientific…
The emergence of large-scale pre-trained models has heightened their application in various downstream tasks, yet deployment is a challenge in environments with limited computational resources. Knowledge distillation has emerged as a…
Prompt learning is an effective paradigm that bridges gaps between the pre-training tasks and the corresponding downstream applications. Approaches based on this paradigm have achieved great transcendent results in various applications.…
Rare diseases, including Inborn Errors of Metabolism (IEM), pose significant diagnostic challenges. Case reports serve as key but computationally underutilized resources to inform diagnosis. Clinical dense information extraction refers to…
A patient-centric approach to healthcare leads to an informal social network among medical professionals. This chapter presents a research framework to: identify the collaboration structure among physicians that is effective and efficient…
Active learning is a unique abstraction of machine learning techniques where the model/algorithm could guide users for annotation of a set of data points that would be beneficial to the model, unlike passive machine learning. The primary…
In relation extraction for knowledge-based question answering, searching from one entity to another entity via a single relation is called "one hop". In related work, an exhaustive search from all one-hop relations, two-hop relations, and…
Clinical decision-making is a fundamental stage in delivering appropriate care to patients. In recent years several decision-making systems designed to aid the clinician in this process have been developed. However, technical solutions…
Clinical trial records are variable resources or the analysis of patients and diseases. Information extraction from free text such as eligibility criteria and summary of results and conclusions in clinical trials would better support…
Medical reports contain rich clinical information but are often unstructured and written in domain-specific language, posing challenges for information extraction. While proprietary large language models (LLMs) have shown promise in…
Information Extraction (IE) seeks to derive structured information from unstructured texts, often facing challenges in low-resource scenarios due to data scarcity and unseen classes. This paper presents a review of neural approaches to…