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Deep neural networks have exhibited remarkable performance across a wide range of real-world tasks. However, comprehending the underlying reasons for their effectiveness remains a challenging problem. Interpreting deep neural networks…

Computer Vision and Pattern Recognition · Computer Science 2023-10-18 Chenxu Zhao , Wei Qian , Yucheng Shi , Mengdi Huai , Ninghao Liu

Objectives: The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of Natural Language Processing (NLP) techniques, particularly Large…

Genomics · Quantitative Biology 2025-02-28 Shuyan Cheng , Yishu Wei , Yiliang Zhou , Zihan Xu , Drew N Wright , Jinze Liu , Yifan Peng

Software vulnerability detection is generally supported by automated static analysis tools, which have recently been reinforced by deep learning (DL) models. However, despite the superior performance of DL-based approaches over rule-based…

Software Engineering · Computer Science 2024-05-03 Yanjing Yang , Xin Zhou , Runfeng Mao , Jinwei Xu , Lanxin Yang , Yu Zhangm , Haifeng Shen , He Zhang

Neuroscience research is undergoing a minor revolution. Recent advances in machine learning and artificial intelligence (AI) research have opened up new ways of thinking about neural computation. Many researchers are excited by the…

Neurons and Cognition · Quantitative Biology 2020-04-20 Andrew Saxe , Stephanie Nelli , Christopher Summerfield

Despite their capabilities, Large Language Models (LLMs) remain opaque with limited understanding of their internal representations. Current interpretability methods either focus on input-oriented feature extraction, such as supervised…

Computation and Language · Computer Science 2025-12-03 Marco Bronzini , Carlo Nicolini , Bruno Lepri , Jacopo Staiano , Andrea Passerini

Large language models (LLMs) have demonstrated broad utility across molecular domains, spanning drug discovery and materials design. Analyzing LLMs' latent representations is crucial for elucidating their underlying mechanisms, improving…

Machine Learning · Computer Science 2026-02-03 Zhuoran Li , Xu Sun , Wanyu Lin , Jiannong Cao

Natural Language Processing (NLP) helps empower intelligent machines by enhancing a better understanding of the human language for linguistic-based human-computer communication. Recent developments in computational power and the advent of…

Computation and Language · Computer Science 2021-03-02 Amirsina Torfi , Rouzbeh A. Shirvani , Yaser Keneshloo , Nader Tavaf , Edward A. Fox

Large Language Models (LLMs) are increasingly utilized in scientific research assessment, particularly in automated paper review. However, existing LLM-based review systems face significant challenges, including limited domain expertise,…

Computation and Language · Computer Science 2025-03-12 Minjun Zhu , Yixuan Weng , Linyi Yang , Yue Zhang

Large language models (LLMs) have demonstrated impressive capabilities across a variety of tasks, but their increasing autonomy in real-world applications raises concerns about their trustworthiness. While hallucinations-unintentional…

Machine Learning · Computer Science 2025-09-04 Haoran Huan , Mihir Prabhudesai , Mengning Wu , Shantanu Jaiswal , Deepak Pathak

Despite the increasing use of large language models (LLMs) in everyday life among neurodivergent individuals, our knowledge of how they engage with, and perceive LLMs remains limited. In this study, we investigate how neurodivergent…

Human-Computer Interaction · Computer Science 2024-10-10 Buse Carik , Kaike Ping , Xiaohan Ding , Eugenia H. Rho

While deep neural networks (DNNs) have become a standard architecture for many machine learning tasks, their internal decision-making process and general interpretability is still poorly understood. Conversely, common decision trees are…

Machine Learning · Computer Science 2022-02-02 Coenraad Mouton , Marelie H. Davel

Large language models (LLMs) are currently at the forefront of intertwining artificial intelligence (AI) systems with human communication and everyday life. Thus, aligning them with human values is of great importance. However, given the…

Computation and Language · Computer Science 2024-06-06 Thilo Hagendorff

This paper introduces an approach to increasing the explainability of artificial intelligence (AI) systems by embedding Large Language Models (LLMs) within standardized analytical processes. While traditional explainable AI (XAI) methods…

Artificial Intelligence · Computer Science 2025-11-11 Marc Jansen , Marcel Pehlke

Individuals with fine motor impairments, such as those caused by conditions like Parkinson's disease, cerebral palsy, or dyspraxia, face significant challenges in interacting with traditional computer interfaces. Historically, scripted…

Human-Computer Interaction · Computer Science 2024-11-20 Shridhar Mehendale , Ankit Walishetti

In recent years, the rapid advancement of large language models (LLMs) in natural language processing has sparked significant interest among researchers to understand their mechanisms and functional characteristics. Although prior studies…

Neurons and Cognition · Quantitative Biology 2026-01-08 Yiheng Liu , Zhengliang Liu , Zihao Wu , Junhao Ning , Haiyang Sun , Sichen Xia , Yang Yang , Xiaohui Gao , Ning Qiang , Bao Ge , Tianming Liu , Junwei Han , Xintao Hu

The application of Large Language Models (LLMs) in accelerating scientific discovery has garnered increasing attention, with a key focus on constructing research agents endowed with innovative capability, i.e., the ability to autonomously…

Computation and Language · Computer Science 2026-02-24 Tianyu Fan , Fengji Zhang , Yuxiang Zheng , Bei Chen , Xinyao Niu , Chengen Huang , Junyang Lin , Chao Huang

In this paper, we propose Describe-and-Dissect (DnD), a novel method to describe the roles of hidden neurons in vision networks. DnD utilizes recent advancements in multimodal deep learning to produce complex natural language descriptions,…

Computer Vision and Pattern Recognition · Computer Science 2025-02-20 Nicholas Bai , Rahul A. Iyer , Tuomas Oikarinen , Akshay Kulkarni , Tsui-Wei Weng

To handle ambiguous and open-ended requests, Large Language Models (LLMs) are increasingly trained to interact with users to surface intents they have not yet expressed (e.g., ask clarification questions). However, users are often ambiguous…

Artificial Intelligence · Computer Science 2026-05-14 Tae Soo Kim , Yoonjoo Lee , Jaesang Yu , John Joon Young Chung , Juho Kim

Although large language models (LLMs) have demonstrated impressive potential on simple tasks, their breadth of scope, lack of transparency, and insufficient controllability can make them less effective when assisting humans on more complex…

Human-Computer Interaction · Computer Science 2022-03-21 Tongshuang Wu , Michael Terry , Carrie J. Cai

As Large Language Models (LLMs) become increasingly integrated into our daily lives, the potential harms from deceptive behavior underlie the need for faithfully interpreting their decision-making. While traditional probing methods have…

Machine Learning · Computer Science 2024-11-08 Anthony Costarelli , Mat Allen , Severin Field