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JAX is widely used in machine learning and scientific computing, the latter of which often relies on existing high-performance code that we would ideally like to incorporate into JAX. Reimplementing the existing code in JAX is often…

Instrumentation and Methods for Astrophysics · Physics 2024-06-28 Jakob Roth , Martin Reinecke , Gordian Edenhofer

Convex clustering is a popular clustering model without requiring the number of clusters as prior knowledge. It can generate a clustering path by continuously solving the model with a sequence of regularization parameter values. This paper…

Optimization and Control · Mathematics 2025-01-28 Hongfei Wu , Yancheng Yuan

NIFTY, "Numerical Information Field Theory", is a software package designed to enable the development of signal inference algorithms that operate regardless of the underlying spatial grid and its resolution. Its object-oriented framework is…

Instrumentation and Methods for Astrophysics · Physics 2013-06-06 Marco Selig , Michael R. Bell , Henrik Junklewitz , Niels Oppermann , Martin Reinecke , Maksim Greiner , Carlos Pachajoa , Torsten A. Enßlin

Context. Inferring spectral parameters from X-ray data is one of the cornerstones of high-energy astrophysics, and is achieved using software stacks that have been developed over the last twenty years and more. However, as models get more…

Instrumentation and Methods for Astrophysics · Physics 2024-10-23 Simon Dupourqué , Didier Barret , Camille M. Diez , Sébastien Guillot , Erwan Quintin

Partial differential equations describing the dynamics of physical systems rarely have closed-form solutions. Fourier spectral methods, which use Fast Fourier Transforms (FFTs) to approximate solutions, are a common approach to solving…

C-based interpreters such as CPython make extensive use of C "extension" code, which is opaque to static analysis tools and faster runtimes with JIT compilers, such as PyPy. Not only are the extensions opaque, but the interface between the…

Programming Languages · Computer Science 2024-05-06 Maxwell Bernstein , CF Bolz-Tereick

Most of Python and R scientific packages incorporate compiled scientific libraries to speed up the code and reuse legacy libraries. While several semi-automatic solutions exist to wrap these compiled libraries, the process of wrapping a…

Software Engineering · Computer Science 2017-06-01 Pierre Fernique , Christophe Pradal

Compilation for embedded processors can be either aggressive (time consuming cross-compilation) or just in time (embedded and usually dynamic). The heuristics used in dynamic compilation are highly constrained by limited resources, time and…

Data Structures and Algorithms · Computer Science 2009-09-18 Florent Bouchez , Alain Darte , Fabrice Rastello

While many mainstream languages such as Java, Python, and C# increasingly incorporate functional APIs to simplify programming and improve parallelization/performance, there are no effective techniques that can be used to automatically…

Programming Languages · Computer Science 2022-03-21 Benjamin Mariano , Yanju Chen , Yu Feng , Greg Durrett , Isil Dillig

Graph algorithms play an important role in many computer science areas. In order to solve problems that can be modeled using graphs, it is necessary to use a data structure that can represent those graphs in an efficient manner. On top of…

Mathematical Software · Computer Science 2023-08-22 Cristian Frăsinaru , Emanuel Florentin Olariu

A probabilistic program defines a probability measure over its semantic structures. One common goal of probabilistic programming languages (PPLs) is to compute posterior probabilities for arbitrary models and queries, given observed…

Artificial Intelligence · Computer Science 2016-07-01 Yi Wu , Lei Li , Stuart Russell , Rastislav Bodik

A master-worker architecture is presented for obtaining combined experimental results through joint fits of datasets from several experiments. The design of the architecture allows such joint fits to be performed keeping the data separated,…

Data Analysis, Statistics and Probability · Physics 2018-04-10 Eli Ben-Haim , René Brun , Bertrand Echenard , Thomas E. Latham

Compound AI applications, which compose calls to ML models using a general-purpose programming language like Python, are widely used for a variety of user-facing tasks, from software engineering to enterprise automation, making their…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-19 Stephen Mell , David Mell , Konstantinos Kallas , Steve Zdancewic , Osbert Bastani

High-level programming languages such as Python are increasingly used to provide intuitive interfaces to libraries written in lower-level languages and for assembling applications from various components. This migration towards…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-21 Yadu Babuji , Anna Woodard , Zhuozhao Li , Daniel S. Katz , Ben Clifford , Rohan Kumar , Lukasz Lacinski , Ryan Chard , Justin M. Wozniak , Ian Foster , Michael Wilde , Kyle Chard

Just-In-Time (JIT) defect prediction aims to automatically predict whether a commit is defective or not, and has been widely studied in recent years. In general, most studies can be classified into two categories: 1) simple models using…

Software Engineering · Computer Science 2024-03-19 Xin Zhou , DongGyun Han , David Lo

Dynamic sparsity, where the sparsity patterns are unknown until runtime, poses a significant challenge to deep learning. The state-of-the-art sparsity-aware deep learning solutions are restricted to pre-defined, static sparsity patterns due…

Context: An increasing number of software systems are written in multiple programming languages (PLs), which are called multi-programming-language (MPL) systems. MPL bugs (MPLBs) refers to the bugs whose resolution involves multiple PLs.…

Software Engineering · Computer Science 2024-07-16 Zengyang Li , Jiabao Ji , Peng Liang , Ran Mo , Hui Liu

Image processing and machine learning applications benefit tremendously from hardware acceleration, but existing compilers target either FPGAs, which sacrifice power and performance for flexible hardware, or ASICs, which rapidly become…

An uncertainty compiler is a tool that automatically translates original computer source code lacking explicit uncertainty analysis into code containing appropriate uncertainty representations and uncertainty propagation algorithms. We have…

Mathematical Software · Computer Science 2023-06-05 Nicholas Gray , Marco De Angelis , Scott Ferson

Graph neural networks (GNNs) have delivered remarkable results in various fields. However, the rapid increase in the scale of graph data has introduced significant performance bottlenecks for GNN inference. Both computational complexity and…

Machine Learning · Computer Science 2025-03-11 Xiabao Wu , Yongchao Liu , Wei Qin , Chuntao Hong
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