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Computational methods and associated software implementations are central to every field of scientific investigation. Modern biological research, particularly within systems biology, has relied heavily on the development of software tools…

Computers and Society · Computer Science 2025-03-07 Kit Gallagher , Richard Creswell , Ben Lambert , Martin Robinson , Chon Lok Lei , Gary R. Mirams , David J. Gavaghan

Software developers commonly rely on platforms like Stack Overflow for problem-solving and learning. However, academic research is an untapped resource that could greatly benefit industry practitioners. The challenge lies in connecting the…

Software Engineering · Computer Science 2025-05-26 Sahar Farzanehpour , Swetha Rajeev , Huayu Liang , Ritvik Prabhu , Chris Brown

From its early foundations in the 1970s, empirical software engineering (ESE) has evolved into a mature research discipline that embraces a plethora of different topics, methodologies, and industrial practices. Despite its remarkable…

Software Engineering · Computer Science 2025-12-09 Justus Bogner , Roberto Verdecchia

The potential disconnect between research and practice in software engineering (SE) means that the uptake of research outcomes has at times been limited. In this paper we seek to identify research approaches that are rigorous in terms of…

Software Engineering · Computer Science 2021-01-12 Petteri Kaskenpalo , Stephen G. MacDonell

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

Research software is often developed by individual researchers or small teams in parallel to their research work. The more people and research projects rely on the software in question, the more important it is that software updates…

Software Engineering · Computer Science 2022-04-13 Robert Mischke , Kathrin Schaffert , Dominik Schneider , Alexander Weinert

This article presents a study on the quality and execution of research code from publicly-available replication datasets at the Harvard Dataverse repository. Research code is typically created by a group of scientists and published together…

Software Engineering · Computer Science 2021-03-25 Ana Trisovic , Matthew K. Lau , Thomas Pasquier , Mercè Crosas

Incorporating responsible practices into software engineering (SE) for AI is essential to ensure ethical principles, societal impact, and accountability remain at the forefront of AI system design and deployment. This study investigates the…

Software Engineering · Computer Science 2025-04-30 Lekshmi Murali Rani , Faezeh Mohammadi , Robert Feldt , Richard Berntsson Svensson

As software has become more essential to research across disciplines, and as the recognition of this fact has grown, the importance of professionalizing the development and maintenance of this software has also increased. The community of…

Software Engineering · Computer Science 2023-04-03 Ian A. Cosden , Kenton McHenry , Daniel S. Katz

Background: Classifications in meta-research enable researchers to cope with an increasing body of scientific knowledge. They provide a framework for, e.g., distinguishing methods, reports, reproducibility, and evaluation in a knowledge…

Software Engineering · Computer Science 2022-09-22 Angelika Kaplan , Thomas Kühn , Ralf Reussner

Experimentation with software prototypes plays a fundamental role in software engineering research. In contrast to many other scientific disciplines, however, explicit support for this key activity in software engineering is relatively…

Software Engineering · Computer Science 2021-10-26 Klaus Schmid , Sascha El-Sharkawy , Christian Kröher

Conducting empirical research in software engineering industry is a process, and as such, it should be generalizable. The aim of this paper is to discuss how academic researchers may address some of the challenges they encounter during…

Software Engineering · Computer Science 2020-03-17 Katarzyna Biesialska , Xavier Franch , Victor Muntés-Mulero

Reproducibility remains a central challenge in computational social science, where complex workflows, evolving software ecosystems, and inconsistent documentation hinder researchers ability to re-execute published methods. This study…

Human-Computer Interaction · Computer Science 2026-03-04 Fakhri Momeni , Sarah Sajid , Johannes Kiesel

Context: Empirical Software Engineering (ESE) drives innovation in SE through qualitative and quantitative studies. However, concerns about the correct application of empirical methodologies have existed since the 2006 Dagstuhl seminar on…

Software Engineering (SE) research involving the use of Large Language Models (LLMs) has introduced several new challenges related to rigour in benchmarking, contamination, replicability, and sustainability. In this paper, we invite the…

Software Engineering · Computer Science 2026-01-21 David Williams , Max Hort , Maria Kechagia , Aldeida Aleti , Justyna Petke , Federica Sarro

Despite the increasing interest in quantum computing, the aspect of development to achieve cost-effective and reliable quantum software applications has been slow. One barrier is the software engineering of quantum programs, which can be…

Software Engineering · Computer Science 2024-08-15 Majid Haghparast , Tommi Mikkonen , Jukka K. Nurminen , Vlad Stirbu

Progress in science is deeply bound to the effective use of high-performance computing infrastructures and to the efficient extraction of knowledge from vast amounts of data. Such data comes from different sources that follow a cycle…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-15 Rosa M Badia , Jorge Ejarque , Francesc Lordan , Daniele Lezzi , Javier Conejero , Javier Álvarez Cid-Fuentes , Yolanda Becerra , Anna Queralt

A large number of computational scientific research projects make use of open source software packages. However, the development process of such tools frequently differs from conventional software development; partly because of the nature…

Software Engineering · Computer Science 2013-09-24 Ivan Girotto , Axel Kohlmeyer , David Grellscheid , Shawn T. Brown

Science communication forms the bridge between computer science researchers and their target audience. Researchers who can effectively draw attention to their research findings and communicate them comprehensibly not only help their target…

Computers and Society · Computer Science 2023-01-25 Marvin Wyrich , Stefan Wagner

Scientific software-defined as computer programs, scripts, or code used in scientific research, data analysis, modeling, or simulation-has become central to modern research. However, there is limited research on the readability and…

Software Engineering · Computer Science 2025-01-20 Alyssia Chen , Carol Wong , Bonita Sharif , Anthony Peruma