Related papers: Emergence of compact-disordered phase in a polymer…
Chromatin is known to be organized into multiple domains of varying sizes and compaction. While these domains are often imagined as static structures, they are highly dynamic and show cell-to-cell variability. Since processes such as gene…
The transition to an absorbing phase in a spatiotemporal system is a well-investigated nonequilibrium dynamic transition. The absorbing phase transitions fall into a few universality classes, defined by the critical exponents observed at…
Biomolecular condensates play essential roles in cellular processes, and recent efforts have focused on understanding their assembly and rational design principles. In this study, we have employed an explicit-solvent minimal statistical…
We study the effects of generalised surface disorder on the monomer-monomer model of heterogeneous catalysis, where disorder is implemented by allowing different adsorption rates for each lattice site. By mapping the system in the…
The kinetic behavior of a three-dimensional off-lattice heteropolymer model is studied in terms of the time dependence of the average mean-square displacement between configurations. It is found that at short time-scales similar behavior is…
We introduce a Potts model with quenched, frustrated disorder, that enjoys of a gauge symmetry that forbids spontaneous magnetization, and allows the glassy phase to extend from $T_c$ down to T=0. We study numerical the 4 dimensional model…
During the eukaryotic cell cycle, chromatin undergoes several conformational changes, which are believed to play key roles in gene expression regulation during interphase, and in genome replication and division during mitosis. In this…
The Potts model is one of the most popular spin models of statistical physics. The prevailing majority of work done so far corresponds to the lattice version of the model. However, many natural or man-made systems are much better described…
The $q$-state Potts model is an archetypical model for various types of phase transitions. We consider it on the square grid and focus on the regime where it undergoes a discontinuous transition, that is $q>4$. At the transition point…
We perform simulations of a system containing simple model proteins and a polymer representing chromatin. We study the interplay between protein-protein and protein-chromatin interactions, and the resulting condensates which arise due to…
Engineering long-range interacting spin systems with ultra cold atoms offers the possibility to explore exotic magnetically ordered phases in strongly-correlated scenarios. Quantum gases in optical cavities provide a versatile experimental…
Motivated by the idea that intrinsically disordered proteins (IDPs) condense into liquid-like droplets within cells, we carry out Monte Carlo simulations of a polymer lattice model to study the relationship between charge patterning and…
A microscopic approach to macroeconomic features is intended. A model for macroeconomic behavior under heterogeneous spatial economic conditions is reviewed. A birth-death lattice gas model taking into account the influence of an economic…
We describe some of the recent results obtained for models with absorbing states. First, we present the nonequilibrium absorbing-state Potts model and discuss some of the factors that might affect the critical behaviour of such models. In…
Two examples of Microcanonical Potts models, 2-dimensional nearest neighbor and mean field, are considered via exact enumeration of states and analytical asymptotic methods. In the interval of energies corresponding to a first order phase…
We present a unifying picture of the compact, dense and dilute phases of two-dimensional polymers. The lattice dependence of the scaling exponents for compact polymers is reconciled with their universality in the dense and dilute case. In…
By means of contact-density chain-growth simulations, we investigate a simple lattice model of a flexible polymer interacting with an attractive substrate. The contact density is a function of the numbers of monomer-substrate and…
We have performed chain-growth simulations of minimalistic hybrid lattice models for polymers interacting with interfaces of attractive solid substrates in order to gain insights into the conformational transitions of the polymers in the…
We study the two-dimensional Potts model on the square lattice in the presence of quenched random-bond impurities. For q>4 the first-order transitions of the pure model are softened due to the impurities, and we determine the resulting…
We consider the problem of inferring a graphical Potts model on a population of variables, with a non-uniform number of Potts colors (symbols) across variables. This inverse Potts problem generally involves the inference of a large number…