Related papers: Computing the alpha complex using dual active set …
The alpha complex, a subset of the Delaunay triangulation, has been extensively used as the underlying representation for biomolecular structures. We propose a GPU-based parallel algorithm for the computation of the alpha complex, which…
The alpha complex is a subset of the Delaunay triangulation and is often used in computational geometry and topology. One of the main drawbacks of using the alpha complex is that it is non-monotone, in the sense that if ${\cal…
Frequently, data in scientific computing is in its abstract form a finite point set in space, and it is sometimes useful or required to compute what one might call the ``shape'' of the set. For that purpose, this paper introduces the formal…
This chapter discusses geometric models of biomolecules and geometric constructs, including the union of ball model, the weigthed Voronoi diagram, the weighted Delaunay triangulation, and the alpha shapes. These geometric constructs enable…
We describe an algorithm to construct an intrinsic Delaunay triangulation of a smooth closed submanifold of Euclidean space. Using results established in a companion paper on the stability of Delaunay triangulations on $\delta$-generic…
Given a finite set of points $P$ sampling an unknown smooth surface $\mathcal{M} \subseteq \mathbb{R}^3$, our goal is to triangulate $\mathcal{M}$ based solely on $P$. Assuming $\mathcal{M}$ is a smooth orientable submanifold of codimension…
Cylindrical algebraic decomposition is one of the most important tools for computing with semi-algebraic sets, while triangular decomposition is among the most important approaches for manipulating constructible sets. In this paper, for an…
We present a simple algorithm for computing higher-order Delaunay mosaics that works in Euclidean spaces of any finite dimensions. The algorithm selects the vertices of the order-$k$ mosaic from incrementally constructed lower-order mosaics…
For a given point set $S$ in a plane, we develop a distributed algorithm to compute the $\alpha-$shape of $S$. $\alpha-$shapes are well known geometric objects which generalize the idea of a convex hull, and provide a good definition for…
We initiate a statistical study of Kalai's exterior algebraic shifting, focusing on concentration phenomena for random triangulations of a fixed space. First, for a uniform $n$-vertex refinement of any given graph $G$, we show that…
In this paper we explore the role of duality principles within the problem of rotation averaging, a fundamental task in a wide range of computer vision applications. In its conventional form, rotation averaging is stated as a minimization…
A square complex is a 2-complex formed by gluing squares together. This article is concerned with the fundamental group $\Gamma$ of certain square complexes of nonpositive curvature, related to quaternion algebras. The abelian subgroup…
In our physically inspired in-tree (IT) based clustering algorithm and the series after it, there is only one free parameter involved in computing the potential value of each point. In this work, based on the Delaunay Triangulation or its…
Summarizing basic facts from abstract topological modules over Colombeau generalized complex numbers we discuss duality of Colombeau algebras. In particular, we focus on generalized delta functionals and operator kernels as elements of dual…
For every Gaussian kernel density estimator $f(x)=\sum_i a_i \exp(-\lVert x-x_i\rVert^2/2h^2)$ associated to a point cloud $\mathcal{D}=\{x_1,...,x_N\}\subset \mathbb{R}^d$, we define a nested family of closed subspaces…
We give an explicit algorithm and source code for computing optimal weights for combining a large number N of alphas. This algorithm does not cost O(N^3) or even O(N^2) operations but is much cheaper, in fact, the number of required…
This paper introduces a Delaunay triangulation algorithm based on the external incremental method. Unlike traditional random incremental methods, this approach uses convex hull and points as basic operational units instead of triangles.…
The \emph{Delaunay graph} of a point set $P \subseteq \mathbb{R}^2$ is the plane graph with the vertex-set $P$ and the edge-set that contains $\{p,p'\}$ if there exists a disc whose intersection with $P$ is exactly $\{p,p'\}$. Accordingly,…
Motivated by an application in cell biology, we consider spatial sorting processes defined by particles moving from an initial to a final configuration. We describe an algorithm for constructing a cell complex in space-time, called the…
The Weyl closure is a basic operation in algebraic analysis: it converts a system of differential operators with rational coefficients into an equivalent system with polynomial coefficients. In addition to encoding finer information on the…