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Small subgraphs (graphlets) are important features to describe fundamental units of a large network. The calculation of the subgraph frequency distributions has a wide application in multiple domains including biology and engineering.…

Machine Learning · Computer Science 2022-07-15 Zhongren Chen , Xinyue Xu , Shengyi Jiang , Hao Wang , Lu Mi

High-level synthesis (HLS) shortens the development time of hardware designs and enables faster design space exploration at a higher abstraction level. Optimization of complex applications in HLS is challenging due to the effects of…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-13 Jieru Zhao , Tingyuan Liang , Sharad Sinha , Wei Zhang

Graph classification benchmarks, vital for assessing and developing graph neural networks (GNNs), have recently been scrutinized, as simple methods like MLPs have demonstrated comparable performance. This leads to an important question: Do…

Machine Learning · Computer Science 2024-08-14 Zhengdao Li , Yong Cao , Kefan Shuai , Yiming Miao , Kai Hwang

Graph Neural Networks (GNNs) present a fundamental hardware challenge by fusing irregular, memory-bound graph traversals with regular, compute-intensive dense matrix operations. While frameworks such as PyTorch Geometric (PyG) and Deep…

Machine Learning · Computer Science 2026-05-27 Anubhab , Rupesh Nasre

Graph neural networks (GNNs) have gained significant interest for applications such as citation network analysis and drug discovery due to their ability to apply machine learning techniques on graph-structured data. GNNs typically employ a…

Hardware Architecture · Computer Science 2026-05-28 Siddhartha Raman Sundara Raman , Lizy John , Jaydeep P. Kulkarni

In many experiment-driven scientific domains, such as high-energy physics, material science, and cosmology, high data rate experiments impose hard constraints on data acquisition systems: collected data must either be indiscriminately…

Hardware Architecture · Computer Science 2023-03-17 Maksim Levental , Arham Khan , Ryan Chard , Kazutomo Yoshii , Kyle Chard , Ian Foster

In recent years, Graph Neural Networks (GNNs) appear to be state-of-the-art algorithms for analyzing non-euclidean graph data. By applying deep-learning to extract high-level representations from graph structures, GNNs achieve extraordinary…

Artificial Intelligence · Computer Science 2021-06-28 Zhe Zhou , Bizhao Shi , Zhe Zhang , Yijin Guan , Guangyu Sun , Guojie Luo

High-Level Synthesis (HLS) plays a crucial role in modern hardware design by transforming high-level code into optimized hardware implementations. However, progress in applying machine learning (ML) to HLS optimization has been hindered by…

Hardware Architecture · Computer Science 2025-08-05 Zedong Peng , Zeju Li , Mingzhe Gao , Qiang Xu , Chen Zhang , Jieru Zhao

Artificial neural networks are already widely used for physics analysis, but there are only few applications within low-level hardware triggers, and typically only with small networks. Modern high-end FPGAs offer Tera-scale arithmetic…

Instrumentation and Detectors · Physics 2020-01-29 N. Nottbeck , C. Schmitt , V. Büscher

Graph Structure Learning (GSL) has recently garnered considerable attention due to its ability to optimize both the parameters of Graph Neural Networks (GNNs) and the computation graph structure simultaneously. Despite the proliferation of…

Machine Learning · Computer Science 2023-10-10 Zhixun Li , Liang Wang , Xin Sun , Yifan Luo , Yanqiao Zhu , Dingshuo Chen , Yingtao Luo , Xiangxin Zhou , Qiang Liu , Shu Wu , Liang Wang , Jeffrey Xu Yu

Recent years have witnessed great success in handling graph-related tasks with Graph Neural Networks (GNNs). Despite their great academic success, Multi-Layer Perceptrons (MLPs) remain the primary workhorse for practical industrial…

Machine Learning · Computer Science 2023-06-06 Lirong Wu , Jun Xia , Haitao Lin , Zhangyang Gao , Zicheng Liu , Guojiang Zhao , Stan Z. Li

Field-Programmable Gate Array (FPGA) accelerators have proven successful in handling latency- and resource-critical deep neural network (DNN) inference tasks. Among the most computationally intensive operations in a neural network (NN) is…

Hardware Architecture · Computer Science 2024-12-10 Marta Andronic , George A. Constantinides

Graph Neural Networks (GNNs) have shown success in learning from graph structured data containing node/edge feature information, with application to social networks, recommendation, fraud detection and knowledge graph reasoning. In this…

Machine Learning · Computer Science 2021-11-24 Xiang Song , Runjie Ma , Jiahang Li , Muhan Zhang , David Paul Wipf

Graph Neural Networks (GNNs) have been widely adopted due to their strong performance. However, GNN training often relies on expensive, high-performance computing platforms, limiting accessibility for many tasks. Profiling of representative…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-12 Tong Qiao , Ao Zhou , Yingjie Qi , Yiou Wang , Han Wan , Jianlei Yang , Chunming Hu

Neural networks have demonstrated their outstanding performance in a wide range of tasks. Specifically recurrent architectures based on long-short term memory (LSTM) cells have manifested excellent capability to model time dependencies in…

Machine Learning · Computer Science 2021-11-09 Martin Ferianc , Zhiqiang Que , Hongxiang Fan , Wayne Luk , Miguel Rodrigues

Graph Neural Networks (GNNs) are widely adopted for fault diagnosis in microservice systems, premised on their ability to model service dependencies. However, the necessity of explicit graph structures remains underexamined, as existing…

Software Engineering · Computer Science 2025-03-11 Fei Gao , Ruyue Xin , Xiaocui Li , Yaqiang Zhang

Dynamic programming (DP) based algorithms are essential yet compute-intensive parts of numerous bioinformatics pipelines, which typically involve populating a 2-D scoring matrix based on a recursive formula, optionally followed by a…

Hardware Architecture · Computer Science 2024-11-07 Yingqi Cao , Anshu Gupta , Jason Liang , Yatish Turakhia

Recurrent neural networks have been shown to be effective architectures for many tasks in high energy physics, and thus have been widely adopted. Their use in low-latency environments has, however, been limited as a result of the…

Graph Neural Networks (GNNs) have become popular across a diverse set of tasks in exploring structural relationships between entities. However, due to the highly connected structure of the datasets, distributed training of GNNs on…

Machine Learning · Computer Science 2025-09-08 Arefin Niam , Tevfik Kosar , M S Q Zulkar Nine

The growing demand for real-time processing in artificial intelligence applications, particularly those involving Convolutional Neural Networks (CNNs), has highlighted the need for efficient computational solutions. Conventional processors,…

Hardware Architecture · Computer Science 2025-10-16 Angelos Athanasiadis , Nikolaos Tampouratzis , Ioannis Papaefstathiou