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Networks constitute efficient tools for assessing universal features of complex systems. In physical contexts, classical as well as quantum, networks are used to describe a wide range of phenomena, such as phase transitions, intricate…

Quantum Physics · Physics 2016-01-22 Jaroslav Novotný , Gernot Alber , Igor Jex

Interest has been rising lately towards methods representing data in non-Euclidean spaces, e.g. hyperbolic or spherical, that provide specific inductive biases useful for certain real-world data properties, e.g. scale-free, hierarchical or…

Machine Learning · Computer Science 2020-05-20 Gregor Bachmann , Gary Bécigneul , Octavian-Eugen Ganea

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…

Signal Processing · Electrical Eng. & Systems 2025-12-12 Gonzalo Mateos , Yanning Shen , Georgios B. Giannakis , Ananthram Swami

Motifs are the fundamental components of complex systems. The topological structure of networks representing complex systems and the frequency and distribution of motifs in these networks are intertwined. The complexities associated with…

Social and Information Networks · Computer Science 2020-05-21 Ali Jazayeri , Christopher C. Yang

The structure of real-world networks is usually difficult to characterize owing to the variation of topological scales, the nondyadic complex interactions, and the fluctuations in the network. We aim to address these problems by introducing…

Social and Information Networks · Computer Science 2019-09-25 Quoc Hoan Tran , Van Tuan Vo , Yoshihiko Hasegawa

The richness of many complex systems stems from the interactions among their components. The higher-order nature of these interactions, involving many units at once, and their temporal dynamics constitute crucial properties that shape the…

Physics and Society · Physics 2024-07-29 Marco Mancastroppa , Iacopo Iacopini , Giovanni Petri , Alain Barrat

Recent advancements in graph representation learning have shifted attention towards dynamic graphs, which exhibit evolving topologies and features over time. The increased use of such graphs creates a paramount need for generative models…

Machine Learning · Computer Science 2024-12-23 Ryien Hosseini , Filippo Simini , Venkatram Vishwanath , Henry Hoffmann

We study metanetworks arising in genotype and phenotype spaces, in the context of a model population of Boolean graphs evolved under selection for short dynamical attractors. We define the adjacency matrix of a graph as its genotype, which…

Biological Physics · Physics 2016-09-06 Burçin Danacı , Ayşe Erzan

Graph neural networks have been shown to be very effective in utilizing pairwise relationships across samples. Recently, there have been several successful proposals to generalize graph neural networks to hypergraph neural networks to…

Machine Learning · Computer Science 2024-02-21 Michael Ng , Hanrui Wu , Andy Yip

Weighted graphs are ubiquitous throughout biology, chemistry, and the social sciences, motivating the development of generative models for abstract weighted graph data using deep neural networks. However, most current deep generative models…

Machine Learning · Computer Science 2025-08-01 Richard Williams , Eric Nalisnick , Andrew Holbrook

A method for embedding graphs in Euclidean space is suggested. The method connects nodes to their geographically closest neighbors and economizes on the total physical length of links. The topological and geometrical properties of…

Condensed Matter · Physics 2007-05-23 Daniel ben-Avraham , Alejandro F. Rozenfeld , Reuven Cohen , Shlomo Havlin

In order to deal with multidimensional structure representations of real-world networks, as well as with their worst-case irreducible information content analysis, the demand for new graph abstractions increases. This article investigates…

Information Theory · Computer Science 2024-10-21 Felipe S. Abrahão , Klaus Wehmuth , Hector Zenil , Artur Ziviani

Convolutional neural networks (CNN's) are powerful and widely used tools. However, their interpretability is far from ideal. One such shortcoming is the difficulty of deducing a network's ability to generalize to unseen data. We use…

Computer Vision and Pattern Recognition · Computer Science 2019-10-21 Rickard Brüel Gabrielsson , Gunnar Carlsson

Modularity is a very widely used measure of the level of clustering or community structure in networks. Here we consider a recent generalisation of the definition of modularity to temporal graphs, whose edge-sets change over discrete…

Combinatorics · Mathematics 2025-07-24 Vilhelm Agdur , Jessica Enright , Laura Larios-Jones , Kitty Meeks , Fiona Skerman , Ella Yates

Given a dynamic network, where edges appear and disappear over time, we are interested in finding sets of edges that have similar temporal behavior and form a dense subgraph. Formally, we define the problem as the enumeration of the maximal…

Social and Information Networks · Computer Science 2021-03-02 Giulia Preti , Polina Rozenshtein , Aristides Gionis , Yannis Velegrakis

Modeling generative process of growing graphs has wide applications in social networks and recommendation systems, where cold start problem leads to new nodes isolated from existing graph. Despite the emerging literature in learning graph…

Machine Learning · Computer Science 2019-06-03 Da Xu , Chuanwei Ruan , Kamiya Motwani , Evren Korpeoglu , Sushant Kumar , Kannan Achan

Most real-world graphs exhibit a hierarchical structure, which is often overlooked by existing graph generation methods. To address this limitation, we propose a novel graph generative network that captures the hierarchical nature of graphs…

Machine Learning · Computer Science 2026-01-01 Mahdi Karami

Self-Organized Operational Neural Networks (Self-ONNs) have recently been proposed as new-generation neural network models with nonlinear learning units, i.e., the generative neurons that yield an elegant level of diversity; however, like…

Computer Vision and Pattern Recognition · Computer Science 2023-04-18 Serkan Kiranyaz , Junaid Malik , Mehmet Yamac , Mert Duman , Ilke Adalioglu , Esin Guldogan , Turker Ince , Moncef Gabbouj

We study spatial embeddings of random graphs in which nodes are randomly distributed in geographical space. We let the edge probability between any two nodes to be dependent on the spatial distance between them and demonstrate that this…

Physics and Society · Physics 2009-11-11 Ling Heng Wong , Philippa Pattison , Garry Robins

Real-world graphs naturally exhibit hierarchical or cyclical structures that are unfit for the typical Euclidean space. While there exist graph neural networks that leverage hyperbolic or spherical spaces to learn representations that embed…

Machine Learning · Computer Science 2023-09-11 Sungjun Cho , Seunghyuk Cho , Sungwoo Park , Hankook Lee , Honglak Lee , Moontae Lee
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