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The success of precision medicine requires computational models that can effectively process and interpret diverse physiological signals across heterogeneous patient populations. While foundation models have demonstrated remarkable transfer…

Machine Learning · Computer Science 2024-12-05 Matthias Christenson , Cove Geary , Brian Locke , Pranav Koirala , Warren Woodrich Pettine

This study presents a broad perspective of hybrid process modeling and optimization combining the scientific knowledge and data analytics in bioprocessing and chemical engineering with a science-guided machine learning (SGML) approach. We…

Machine Learning · Computer Science 2022-01-26 Niket Sharma , Y. A. Liu

Many mechanical engineering applications call for multiscale computational modeling and simulation. However, solving for complex multiscale systems remains computationally onerous due to the high dimensionality of the solution space.…

Machine Learning · Computer Science 2023-03-23 Phong C. H. Nguyen , Joseph B. Choi , H. S. Udaykumar , Stephen Baek

Detecting slender, overlapping structures remains a challenge in computational microscopy. While recent coordinate-based approaches improve detection, they often produce less accurate splines than pixel-based methods. We introduce a…

Image and Video Processing · Electrical Eng. & Systems 2025-10-07 Frans Zdyb , Albert Alonso , Julius B. Kirkegaard

In engineering applications almost all processes are described with the help of models. Especially forming machines heavily rely on mathematical models for control and condition monitoring. Inaccuracies during the modeling, manufacturing…

The complexity of droplet microfluidics grows by implementing parallel processes and multiple functionalities on a single device. This poses a challenge to the engineer designing the microfluidic networks. In today's design processes, the…

Fluid Dynamics · Physics 2018-10-03 Andreas Grimmer , Medina Hamidović , Werner Haselmayr , Robert Wille

In this perspective, we examine three key aspects of an end-to-end pipeline for realistic cellular simulations: reconstruction and segmentation of cellular structures; generation of cellular structures; and mesh generation, simulation, and…

Simulation offers a simple and flexible way to estimate the power of a clinical trial when analytic formulae are not available. The computational burden of using simulation has, however, restricted its application to only the simplest of…

When modeling complex, hierarchical, and time-dynamic systems, such as biological systems, good computational tools are essential. Current tools, while powerful, often lack comprehensive frameworks for modular model composition,…

Quantitative Methods · Quantitative Biology 2025-10-17 Henrik Podéus , Gustav Magnusson , Sasan Keshmiri , Kajsa Tunedal , Nicolas Sundqvist , William Lövfors , Gunnar Cedersund

Simulation is often used to evaluate the relevance of a Directing Program of Production (PDP) or to evaluate its impact on detailed sc\'enarii of scheduling. Within this framework, we propose to reduce the complexity of a model of…

Neural and Evolutionary Computing · Computer Science 2008-12-08 Philippe Thomas , André Thomas

As a complementary tool to laboratory experiments, discrete numerical simulation, applied to granular materials, provides valuable information on the grain and contact scale microstructure, thereby enabling one to better understand the…

Classical Physics · Physics 2009-01-23 Jean-Noël Roux , François Chevoir

Molecular Dynamics (MD) simulations are fundamental computational tools for the study of proteins and their free energy landscapes. However, sampling protein conformational changes through MD simulations is challenging due to the relatively…

Biomolecules · Quantitative Biology 2023-07-20 Diego E. Kleiman , Hassan Nadeem , Diwakar Shukla

Modelling complex real-world situations such as infectious diseases, geological phenomena, and biological processes can present a dilemma: the computer model (referred to as a simulator) needs to be complex enough to capture the dynamics of…

The deployment of machine learning models in operational contexts represents a significant investment for any organisation. Consequently, the risk of these models being misappropriated by competitors needs to be addressed. In recent years,…

Machine Learning · Computer Science 2025-05-26 Augustin Godinot , Erwan Le Merrer , Camilla Penzo , François Taïani , Gilles Trédan

Closure problems are omnipresent when simulating multiscale systems, where some quantities and processes cannot be fully prescribed despite their effects on the simulation's accuracy. Recently, scientific machine learning approaches have…

Numerical Analysis · Mathematics 2024-09-13 Benjamin Sanderse , Panos Stinis , Romit Maulik , Shady E. Ahmed

Traditional machine learning (ML) algorithms, such as multiple regression, require human analysts to make decisions on how to treat the data. These decisions can make the model building process subjective and difficult to replicate for…

Machine Learning · Computer Science 2022-01-31 William Franz Lamberti

Sequential sampling models (SSMs) are a widely used framework describing decision-making as a stochastic, dynamic process of evidence accumulation. SSMs popularity across cognitive science has driven the development of various software…

Mathematical Software · Computer Science 2025-12-17 Kianté Fernandez , Dominique Makowski , Christopher Fisher

We propose a visualization application, designed for the exploration of human spine simulation data. Our goal is to support research in biomechanical spine simulation and advance efforts to implement simulation-backed analysis in surgical…

Graphics · Computer Science 2021-02-02 Pepe Eulzer , Sabine Bauer , Francis Kilian , Kai Lawonn

Model slicing is a useful technique for identifying a subset of a larger model that is relevant to fulfilling a given requirement. Notable applications of slicing include reducing inspection effort when checking design adequacy to meet…

Software Engineering · Computer Science 2024-05-06 Dipeeka Luitel , Shiva Nejati , Mehrdad Sabetzadeh

Computer simulators are nowadays widely used to understand complex physical systems in many areas such as aerospace, renewable energy, climate modeling, and manufacturing. One fundamental issue in the study of computer simulators is known…

Methodology · Statistics 2019-02-05 Feng Yang , C. Devon Lin , Pritam Ranjan
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