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Molecular dynamics (MD) simulations are a central tool in science and engineering enabling the study of dynamical behavior and the link between microscopic structure and macroscopic function. Their high computational cost, however, has…

Chemical Physics · Physics 2026-01-22 Salman N. Salman , Sergey A. Shteingolts , Ron Levie , Dan Mendels

Dislocation climb mobilities, assuming vacancy bulk diffusion, are derived and implemented in dislocation dynamics simulations to study the coarsening of vacancy prismatic loops in fcc metals. When loops cannot glide, the comparison of the…

Materials Science · Physics 2011-06-29 Botond Bakó , Emmanuel Clouet , Laurent Dupuy , Marc Blétry

Continuum dislocation dynamics models of mesoscale plasticity consist of dislocation transport-reaction equations coupled with crystal mechanics equations. The coupling between these two sets of equations is such that dislocation transport…

Materials Science · Physics 2021-02-09 Peng Lin , Vignesh Vivekanandan , Kyle Starkey , Benjamin Anglin , Clint Geller , Anter El-Azab

In drug discovery, molecular dynamics (MD) simulation for protein-ligand binding provides a powerful tool for predicting binding affinities, estimating transport properties, and exploring pocket sites. There has been a long history of…

We present a comparison between two approaches to modelling hyperelastic material behaviour using data. The first approach is a novel approach based on Data-driven Computational Mechanics (DDCM) that completely bypasses the definition of a…

Computational Engineering, Finance, and Science · Computer Science 2024-09-23 Martin Zlatić , Felipe Rocha , Laurent Stainier , Marko Čanađija

This work introduces a model for large-strain, geometrically nonlinear elasto-plastic dynamics in single crystals. The key feature of our model is that the plastic dynamics are entirely driven by the movement of dislocations, that is,…

Materials Science · Physics 2022-02-11 Thomas Hudson , Filip Rindler

Dynamic Mode Decomposition (DMD) is a numerical method that seeks to fit timeseries data to a linear dynamical system. In doing so, DMD decomposes dynamic data into spatially coherent modes that evolve in time according to exponential…

Computer Vision and Pattern Recognition · Computer Science 2026-02-26 Marco Mignacca , Simone Brugiapaglia , Jason J. Bramburger

We present a new framework to quantify the effect of hydrogen on dislocations using large scale three-dimensional (3D) discrete dislocation dynamics (DDD) simulations. In this model, the first order elastic interaction energy associated…

Materials Science · Physics 2018-01-31 Yejun Gu , Jaafar A. El-Awady

Predicting the behaviour of complex systems is one of the main goals of science. An important example is plastic deformation of micron-scale crystals, a process mediated by collective dynamics of dislocations, manifested as broadly…

Materials Science · Physics 2022-06-03 Marcin Mińkowski , David Kurunczi-Papp , Lasse Laurson

Elastic topological states have been receiving increased intention in numerous scientific and engineering fields due to their defect-immune nature, resulting in applications of vibration control and information processing. Here, we present…

Applied Physics · Physics 2023-05-31 Shuaifeng Li , Panayotis G. Kevrekidis , Jinkyu Yang

Plasticity is governed by the evolution of, in general anisotropic, systems of dislocations. We seek to faithfully represent this evolution in terms of density-like variables which average over the discrete dislocation microstructure.…

Materials Science · Physics 2016-09-21 Mehran Monavari , Stefan Sandfeld , Michael Zaiser

Integration of physics principles with data-driven methods has attracted great attention in recent few years. In this study, a physics-informed dynamic mode decomposition (piDMD) method, where the mass conservation law is integrated with a…

Fluid Dynamics · Physics 2023-11-07 Dandan Li , Bidan Zhao , Shuai Lu , Junwu Wang

Molecular dynamics (MD) has served as a powerful tool for designing materials with reduced reliance on laboratory testing. However, the use of MD directly to treat the deformation and failure of materials at the mesoscale is still largely…

Materials Science · Physics 2023-01-12 Huaiqian You , Xiao Xu , Yue Yu , Stewart Silling , Marta D'Elia , John Foster

Size-based separation of bioparticles/cells is crucial to a variety of biomedical processing steps for applications such as exosomes and DNA isolation. Design and improvement of such microfluidic devices is a challenge to best answer the…

Neural and Evolutionary Computing · Computer Science 2022-08-31 Farzad Vatandoust , Hoseyn A. Amiri , Sima Mas-hafi

Differentiable physics enables efficient gradient-based optimizations of neural network (NN) controllers. However, existing work typically only delivers NN controllers with limited capability and generalizability. We present a practical…

Artificial Intelligence · Computer Science 2023-10-31 Yu Fang , Jiancheng Liu , Mingrui Zhang , Jiasheng Zhang , Yidong Ma , Minchen Li , Yuanming Hu , Chenfanfu Jiang , Tiantian Liu

Molecular dynamics simulations are a powerful tool to study diffusion processes in battery electrolyte and electrode materials. From a single molecular dynamics simulation many properties relevant to diffusion can be obtained, including the…

Chemical Physics · Physics 2018-07-09 Niek J. J. de Klerk , Eveline van der Maas , Marnix Wagemaker

In this paper, we introduce a modular deep neural network (DNN) framework for data-driven reduced order modeling of dynamical systems relevant to fluid flows. We propose various deep neural network architectures which numerically predict…

Computational Physics · Physics 2019-09-04 S. Pawar , S. M. Rahman , H. Vaddireddy , O. San , A. Rasheed , P. Vedula

We use machine learning (ML) to infer stress and plastic flow rules using data from repre- sentative polycrystalline simulations. In particular, we use so-called deep (multilayer) neural networks (NN) to represent the two response…

Computational Physics · Physics 2018-09-05 Reese E. Jones , Jeremy A. Templeton , Clay M. Sanders , Jakob T. Ostien

Differential dynamic microscopy (DDM) typically relies on movies containing hundreds or thousands of frames to accurately quantify motion in soft matter systems. Using movies much shorter in duration produces noisier and less accurate…

Soft Condensed Matter · Physics 2024-11-05 Gildardo Martinez , Justin Siu , Steven Dang , Dylan Gage , Emma Kao , Juan Carlos Avila , Ruilin You , Ryan McGorty

In this work, we demonstrate how physical principles -- such as symmetries, invariances, and conservation laws -- can be integrated into the dynamic mode decomposition (DMD). DMD is a widely-used data analysis technique that extracts…

Dynamical Systems · Mathematics 2021-12-09 Peter J. Baddoo , Benjamin Herrmann , Beverley J. McKeon , J. Nathan Kutz , Steven L. Brunton