Related papers: Revisiting Tree Isomorphism: An Algorithmic Bric-\…
We describe a heuristic algorithm for computing treedepth decompositions, submitted for the PACE 2020 challenge. It relies on a variety of greedy algorithms computing elimination orderings, as well as a Divide & Conquer approach on balanced…
Tree embedding has been a fundamental method in algorithm design with wide applications. We focus on the efficiency of building tree embedding in various computational settings under high-dimensional Euclidean $\mathbb{R}^d$. We devise a…
Given two rooted, ordered, and labeled trees $P$ and $T$ the tree inclusion problem is to determine if $P$ can be obtained from $T$ by deleting nodes in $T$. This problem has recently been recognized as an important query primitive in XML…
The problem of {\em efficiently} finding the best match for a query in a given set with respect to the Euclidean distance or the cosine similarity has been extensively studied in literature. However, a closely related problem of efficiently…
Sorting and hashing are two completely different concepts in computer science, and appear mutually exclusive to one another. Hashing is a search method using the data as a key to map to the location within memory, and is used for rapid…
Recent work has proven the existence of extreme inbreeding in a European ancestry sample taken from the contemporary UK population \cite{nature_01}. This result brings our attention again to a math problem related to inbreeding family trees…
We describe an algorithm computing an optimal prefix free code from $N$ unsorted positive integer weights in time linear in the number of machine words holding those weights. This algorithm takes advantage of common non-algebraic…
We give a fixed-parameter tractable algorithm that, given a parameter $k$ and two graphs $G_1,G_2$, either concludes that one of these graphs has treewidth at least $k$, or determines whether $G_1$ and $G_2$ are isomorphic. The running time…
We present an $O(n^2)$-time algorithm to test whether an $n$-vertex directed partial $2$-tree is upward planar. This result improves upon the previously best known algorithm, which runs in $O(n^4)$ time.
We give a 2-approximation algorithm for the Maximum Agreement Forest problem on two rooted binary trees. This NP-hard problem has been studied extensively in the past two decades, since it can be used to compute the rooted Subtree…
The {\em edit distance} between two ordered trees with vertex labels is the minimum cost of transforming one tree into the other by a sequence of elementary operations consisting of deleting and relabeling existing nodes, as well as…
This paper studies a fundamental algorithmic problem related to the design of demand-aware networks: networks whose topologies adjust toward the traffic patterns they serve, in an online manner. The goal is to strike a tradeoff between the…
Pedigree graphs, or family trees, are typically constructed by an expensive process of examining genealogical records to determine which pairs of individuals are parent and child. New methods to automate this process take as input genetic…
The three-in-a-tree problem is to determine if a simple undirected graph contains an induced subgraph which is a tree connecting three given vertices. Based on a beautiful characterization that is proved in more than twenty pages,…
We present the first sub-quadratic time algorithm that with high probability correctly reconstructs phylogenetic trees for short sequences generated by a Markov model of evolution. Due to rapid expansion in sequence databases, such very…
A minimax tree is similar to a Huffman tree except that, instead of minimizing the weighted average of the leaves' depths, it minimizes the maximum of any leaf's weight plus its depth. Golumbic (1976) introduced minimax trees and gave a…
We present $k^{O(k^2)} m$ time algorithms for various problems about decomposing a given undirected graph by edge cuts or vertex separators of size $<k$ into parts that are ``well-connected'' with respect to cuts or separators of size $<k$;…
Approximate bi-level optimization (ABLO) consists of (outer-level) optimization problems, involving numerical (inner-level) optimization loops. While ABLO has many applications across deep learning, it suffers from time and memory…
We demonstrate that adaptively controlling the size of individual regression trees in a random forest can improve predictive performance, contrary to the conventional wisdom that trees should be fully grown. A fast pruning algorithm,…
The trie-based radix sort algorithm stores pairwise different infinite binary strings in the leaves of a binary tree in a way that the Ulam-Harris coding of each leaf equals a prefix (that is, an initial segment) of the corresponding…