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We introduce GraSPy, a Python library devoted to statistical inference, machine learning, and visualization of random graphs and graph populations. This package provides flexible and easy-to-use algorithms for analyzing and understanding…

Social and Information Networks · Computer Science 2019-10-25 Jaewon Chung , Benjamin D. Pedigo , Eric W. Bridgeford , Bijan K. Varjavand , Hayden S. Helm , Joshua T. Vogelstein

Modern time series analysis demands frameworks that are flexible, efficient, and extensible. However, many existing Python libraries exhibit limitations in modularity and in their native support for irregular, multi-source, or sparse data.…

Machine Learning · Computer Science 2025-08-27 Zhijin Wang , Senzhen Wu , Yue Hu , Xiufeng Liu

Recently there has been increasing interest in developing and deploying deep graph learning algorithms for many tasks, such as fraud detection and recommender systems. Albeit, there is a limited number of publicly available graph-structured…

Machine Learning · Computer Science 2023-10-06 Sajad Darabi , Piotr Bigaj , Dawid Majchrowski , Artur Kasymov , Pawel Morkisz , Alex Fit-Florea

We present PyRigi, a novel Python package designed to study the rigidity properties of graphs and frameworks. Among many other capabilities, PyRigi can determine whether a graph admits only finitely many ways, up to isometries, of being…

Metric Geometry · Mathematics 2025-06-06 Matteo Gallet , Georg Grasegger , Matthias Himmelmann , Jan Legerský

Materials science is undergoing profound changes due to advances in characterization instrumentation that have resulted in an explosion of data in terms of volume, velocity, variety and complexity. Harnessing these data for scientific…

We introduce Geomstats, an open-source Python toolbox for computations and statistics on nonlinear manifolds, such as hyperbolic spaces, spaces of symmetric positive definite matrices, Lie groups of transformations, and many more. We…

We present DeepBridge, an 80K-line Python library that unifies multi-dimensional validation, automatic compliance verification, knowledge distillation, and synthetic data generation. DeepBridge offers: (i) 5 validation suites (fairness with…

Machine Learning · Computer Science 2025-12-24 Gustavo Coelho Haase , Paulo Henrique Dourado da Silva

We present PyTorch Connectomics (PyTC), an open-source deep-learning framework for the semantic and instance segmentation of volumetric microscopy images, built upon PyTorch. We demonstrate the effectiveness of PyTC in the field of…

Image and Video Processing · Electrical Eng. & Systems 2021-12-14 Zudi Lin , Donglai Wei , Jeff Lichtman , Hanspeter Pfister

Electron ptychography has recently achieved unprecedented resolution, offering valuable insights across diverse material systems, including in three dimensions. However, high-quality ptychographic reconstruction is computationally expensive…

Materials Science · Physics 2025-08-07 Chia-Hao Lee , Steven E. Zeltmann , Dasol Yoon , Desheng Ma , David A. Muller

We present a new program able to perform visual structural analysis on 3D particle systems called PASYVAT (PArticle SYstem Visual Analysis Tool). More specifically, it can select multiple interparticle distance ranges from a radial…

Computational Physics · Physics 2017-02-06 Alfredo Metere , Tomas Oppelstrup , Mikhail Dzugutov , Anders Hast

Magnetron sputtering is an essential technique in combinatorial materials science, enabling the efficient synthesis of thin-film materials libraries with continuous compositional gradients. For exploring multidimensional search spaces,…

Materials Science · Physics 2024-11-22 Felix Thelen , Rico Zehl , Jan Lukas Bürgel , Diederik Depla , Alfred Ludwig

Python has become the de-facto language for training deep neural networks, coupling a large suite of scientific computing libraries with efficient libraries for tensor computation such as PyTorch or TensorFlow. However, when models are used…

Machine Learning · Computer Science 2021-04-02 Zachary DeVito , Jason Ansel , Will Constable , Michael Suo , Ailing Zhang , Kim Hazelwood

Digital processing-in-memory (PIM) architectures mitigate the memory wall problem by facilitating parallel bitwise operations directly within the memory. Recent works have demonstrated their algorithmic potential for accelerating…

Hardware Architecture · Computer Science 2024-10-01 Orian Leitersdorf , Ronny Ronen , Shahar Kvatinsky

We propose SymDiff, a method for constructing equivariant diffusion models using the framework of stochastic symmetrisation. SymDiff resembles a learned data augmentation that is deployed at sampling time, and is lightweight,…

Machine Learning · Computer Science 2025-03-04 Leo Zhang , Kianoosh Ashouritaklimi , Yee Whye Teh , Rob Cornish

We introduce the \texttt{pyunicorn} (Pythonic unified complex network and recurrence analysis toolbox) open source software package for applying and combining modern methods of data analysis and modeling from complex network theory and…

Understanding how galaxies form and evolve requires measuring their light distributions in images taken by telescopes. This process often involves fitting mathematical models to galaxy images to extract properties such as size, brightness,…

Instrumentation and Methods for Astrophysics · Physics 2026-01-12 Christopher Añorve

Bibliometric analysis is a critical tool for understanding the structure, dynamics, and impact of scientific research. Traditional methods often fall short in capturing the intricate relationships and evolving trends within scientific…

Digital Libraries · Computer Science 2026-01-27 Mirko Lai , Salvatore Vilella , Federica Cena , Giancarlo Ruffo

Python has emerged as one of the most popular programming languages, extensively utilized in domains such as machine learning, data analysis, and web applications. Python's dynamic nature and extensive usage make it an attractive candidate…

Software Engineering · Computer Science 2024-03-04 Islem Bouzenia , Bajaj Piyush Krishan , Michael Pradel

Physical reservoir computing (PRC) is a computing framework that harnesses the intrinsic dynamics of physical systems for computation. It offers a promising energy-efficient alternative to traditional von Neumann computing for certain…

Computational Engineering, Finance, and Science · Computer Science 2024-10-25 Harry Youel , Daniel Prestwood , Oscar Lee , Tianyi Wei , Kilian D. Stenning , Jack C. Gartside , Will R. Branford , Karin Everschor-Sitte , Hidekazu Kurebayashi

Effective hydrodynamic modeling is crucial for accurately predicting fluid-particle interactions in diverse fields such as biophysics and materials science. Developing and implementing hydrodynamic algorithms is challenging due to the…