English
Related papers

Related papers: AntiBARTy Diffusion for Property Guided Antibody D…

200 papers

In this study, we generate and maintain a database of 10 million virtual lipids through METiS's in-house de novo lipid generation algorithms and lipid virtual screening techniques. These virtual lipids serve as a corpus for pre-training,…

Computation and Language · Computer Science 2025-05-06 Tianhao Yu , Cai Yao , Zhuorui Sun , Feng Shi , Lin Zhang , Kangjie Lyu , Xuan Bai , Andong Liu , Xicheng Zhang , Jiali Zou , Wenshou Wang , Chris Lai , Kai Wang

With the increasing prevalence of diffusion-based malicious image manipulation, existing proactive defense methods struggle to safeguard images against tampering under unknown conditions. To address this, we propose Anti-Inpainting, a…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Yimao Guo , Zuomin Qu , Wei Lu , Xiangyang Luo

Novel diagnostic and therapeutic radiopharmaceuticals are increasingly becoming a central part of personalized medicine. Continued innovation in the development of new radiopharmaceuticals is key to sustained growth and advancement of…

Biomolecules · Quantitative Biology 2021-08-06 Bahar Ataeinia , Pedram Heidari

Safety-critical applications, such as autonomous driving and medical image analysis, require extensive multimodal data for rigorous testing. Synthetic data methods are gaining prominence due to the cost and complexity of gathering…

Computer Vision and Pattern Recognition · Computer Science 2025-08-01 Alexandru Buburuzan

Structure-based drug design (SBDD) aims to design small-molecule ligands that bind with high affinity and specificity to pre-determined protein targets. Generative SBDD methods leverage structural data of drugs in complex with their protein…

Generative models have recently undergone significant advancement due to the diffusion models. The success of these models can be often attributed to their use of guidance techniques, such as classifier or classifier-free guidance, which…

Computer Vision and Pattern Recognition · Computer Science 2023-01-31 Gyeongnyeon Kim , Wooseok Jang , Gyuseong Lee , Susung Hong , Junyoung Seo , Seungryong Kim

We study image inpainting with generative diffusion models. Existing methods typically either train dedicated task-specific models, or adapt a pretrained diffusion model separately for each masked image at deployment. We introduce a…

Computer Vision and Pattern Recognition · Computer Science 2026-05-14 Yilie Huang , Xun Yu Zhou

Over the past 40 years, the discovery and development of therapeutic antibodies to treat disease has become common practice. However, as therapeutic antibody constructs are becoming more sophisticated (e.g., multi-specifics), conventional…

Biomolecules · Quantitative Biology 2023-12-19 Leonard Wossnig , Norbert Furtmann , Andrew Buchanan , Sandeep Kumar , Victor Greiff

We introduce AbDiffuser, an equivariant and physics-informed diffusion model for the joint generation of antibody 3D structures and sequences. AbDiffuser is built on top of a new representation of protein structure, relies on a novel…

Autoregressive models and their sequential factorization of the data likelihood have recently demonstrated great potential for image representation and synthesis. Nevertheless, they incorporate image context in a linear 1D order by…

Computer Vision and Pattern Recognition · Computer Science 2021-08-20 Patrick Esser , Robin Rombach , Andreas Blattmann , Björn Ommer

In this paper, we study fast training of adversarially robust models. From the analyses of the state-of-the-art defense method, i.e., the multi-step adversarial training, we hypothesize that the gradient magnitude links to the model…

Computer Vision and Pattern Recognition · Computer Science 2019-08-02 Jianyu Wang , Haichao Zhang

Multispecific antibodies offer transformative therapeutic potential by engaging multiple epitopes simultaneously, yet their efficacy is an emergent property governed by complex molecular architectures. Rational design is often bottlenecked…

Therapeutic antibodies have been extensively studied in drug discovery and development in the past decades. Antibodies are specialized protective proteins that bind to antigens in a lock-to-key manner. The binding strength/affinity between…

Machine Learning · Computer Science 2024-06-21 Bohao Xu , Yanbo Wang , Wenyu Chen , Shimin Shan

This paper addresses the challenge of generating adversarial image using a diffusion model to deceive multimodal large language models (MLLMs) into generating the targeted responses, while avoiding significant distortion of the clean image.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-01 Chengwei Xia , Fan Ma , Ruijie Quan , Kun Zhan , Yi Yang

In practical application, the widespread deployment of diffusion models often necessitates substantial investment in training. As diffusion models find increasingly diverse applications, concerns about potential misuse highlight the…

Computer Vision and Pattern Recognition · Computer Science 2024-10-31 Jijia Yang , Sen Peng , Xiaohua Jia

Controllable pathology image synthesis requires reliable regulation of spatial layout, tissue morphology, and semantic detail. However, existing text-guided diffusion models offer only coarse global control and lack the ability to enforce…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Yuntao Shou , Xiangyong Cao , Qian Zhao , Deyu Meng

Generative diffusion models are becoming one of the most popular prior in image restoration (IR) tasks due to their remarkable ability to generate realistic natural images. Despite achieving satisfactory results, IR methods based on…

Computer Vision and Pattern Recognition · Computer Science 2025-01-27 Di You , Pier Luigi Dragotti

Generative models have been very popular in the recent years for their image generation capabilities. GAN-based models are highly regarded for their disentangled latent space, which is a key feature contributing to their success in…

Computer Vision and Pattern Recognition · Computer Science 2023-12-12 Yusuf Dalva , Pinar Yanardag

The development of therapeutic antibodies heavily relies on accurate predictions of how antigens will interact with antibodies. Existing computational methods in antibody design often overlook crucial conformational changes that antigens…

Quantitative Methods · Quantitative Biology 2025-03-05 Cheng Tan , Yijie Zhang , Zhangyang Gao , Yufei Huang , Haitao Lin , Lirong Wu , Fandi Wu , Mathieu Blanchette , Stan. Z. Li

Domain-aware machine learning (ML) models have been increasingly adopted for accelerating small molecule therapeutic design in the recent years. These models have been enabled by significant advancement in state-of-the-art artificial…

Machine Learning · Computer Science 2021-02-12 Rajendra P. Joshi , Neeraj Kumar