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The overwhelming amount of biomedical scientific texts calls for the development of effective language models able to tackle a wide range of biomedical natural language processing (NLP) tasks. The most recent dominant approaches are…

Computation and Language · Computer Science 2021-04-21 Giacomo Miolo , Giulio Mantoan , Carlotta Orsenigo

For several purposes in Natural Language Processing (NLP), such as Information Extraction, Sentiment Analysis or Chatbot, Named Entity Recognition (NER) holds an important role as it helps to determine and categorize entities in text into…

Computation and Language · Computer Science 2020-03-24 Thong Nguyen , Duy Nguyen , Pramod Rao

The availability of large amounts of computer-readable textual data and hardware that can process the data has shifted the focus of knowledge projects towards deep learning architecture. Natural Language Processing, particularly the task of…

Computation and Language · Computer Science 2021-01-28 Arya Roy

Progress in biomedical Named Entity Recognition (NER) and Entity Linking (EL) is currently hindered by a fragmented data landscape, a lack of resources for building explainable models, and the limitations of semantically-blind evaluation…

Computation and Language · Computer Science 2025-11-17 Nishant Mishra , Wilker Aziz , Iacer Calixto

Recurrent Neural Network models are the state-of-the-art for Named Entity Recognition (NER). We present two innovations to improve the performance of these models. The first innovation is the introduction of residual connections between the…

Computation and Language · Computer Science 2017-07-12 Quan Tran , Andrew MacKinlay , Antonio Jimeno Yepes

Backgrounds: Information extraction (IE) is critical in clinical natural language processing (NLP). While large language models (LLMs) excel on generative tasks, their performance on extractive tasks remains debated. Methods: We…

Natural language processing (NLP) is a key technology to extract important patient information from clinical narratives to support healthcare applications. The rapid development of large language models (LLMs) has revolutionized many NLP…

Computation and Language · Computer Science 2025-09-08 Cheng Peng , Xinyu Dong , Mengxian Lyu , Daniel Paredes , Yaoyun Zhang , Yonghui Wu

The large set of technical documentation of legacy accelerator systems, coupled with the retirement of experienced personnel, underscores the urgent need for efficient methods to preserve and transfer specialized knowledge. This paper…

Information Retrieval · Computer Science 2025-09-03 Qing Dai , Rasmus Ischebeck , Maruisz Sapinski , Adam Grycner

Named entity recognition (NER) systems that perform well require task-related and manually annotated datasets. However, they are expensive to develop, and are thus limited in size. As there already exists a large number of NER datasets that…

Computation and Language · Computer Science 2019-04-23 Nargiza Nosirova , Mingbin Xu , Hui Jiang

Process discovery aims to derive process models from event logs, providing insights into operational behavior and forming a foundation for conformance checking and process improvement. However, models derived solely from event data may not…

Artificial Intelligence · Computer Science 2025-10-09 Ali Norouzifar , Humam Kourani , Marcus Dees , Wil van der Aalst

Named Entity Recognition (NER) is a fundamental task in NLP that is used to locate the key information in text and is primarily applied in conversational and search systems. In commercial applications, NER or comparable slot-filling methods…

Computation and Language · Computer Science 2023-06-13 Maithili Sabane , Aparna Ranade , Onkar Litake , Parth Patil , Raviraj Joshi , Dipali Kadam

In-Context Learning (ICL) technique based on Large Language Models (LLMs) has gained prominence in Named Entity Recognition (NER) tasks for its lower computing resource consumption, less manual labeling overhead, and stronger…

Computation and Language · Computer Science 2025-05-30 Yuzhen Xiao , Jiahe Song , Yongxin Xu , Ruizhe Zhang , Yiqi Xiao , Xin Lu , Runchuan Zhu , Bowen Jiang , Junfeng Zhao

Accurate skill extraction from job descriptions is crucial in the hiring process but remains challenging. Named Entity Recognition (NER) is a common approach used to address this issue. With the demonstrated success of large language models…

Computation and Language · Computer Science 2024-10-17 Amirhossein Herandi , Yitao Li , Zhanlin Liu , Ximin Hu , Xiao Cai

Biomedical entity linking is the task of identifying mentions of biomedical concepts in text documents and mapping them to canonical entities in a target thesaurus. Recent advancements in entity linking using BERT-based models follow a…

Computation and Language · Computer Science 2021-03-10 Rajarshi Bhowmik , Karl Stratos , Gerard de Melo

The use of BERT, one of the most popular language models, has led to improvements in many Natural Language Processing (NLP) tasks. One such task is Named Entity Recognition (NER) i.e. automatic identification of named entities such as…

Computation and Language · Computer Science 2023-03-10 Harshil Darji , Jelena Mitrović , Michael Granitzer

Despite the impressive capabilities of large language models (LLMs), their performance on information extraction tasks is still not entirely satisfactory. However, their remarkable rewriting capabilities and extensive world knowledge offer…

Computation and Language · Computer Science 2024-02-23 Junjie Ye , Nuo Xu , Yikun Wang , Jie Zhou , Qi Zhang , Tao Gui , Xuanjing Huang

Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…

Computation and Language · Computer Science 2021-05-25 Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek

While pioneering deep learning methods have made great strides in analyzing electronic health record (EHR) data, they often struggle to fully capture the semantics of diverse medical codes from limited data. The integration of external…

Machine Learning · Computer Science 2024-08-26 Zhihao Yu , Yujie Jin , Yongxin Xu , Xu Chu , Yasha Wang , Junfeng Zhao

Entity linking (mapping ambiguous mentions in text to entities in a knowledge base) is a foundational step in tasks such as knowledge graph construction, question-answering, and information extraction. Our method, LELA, is a modular…

Computation and Language · Computer Science 2026-01-09 Samy Haffoudhi , Fabian M. Suchanek , Nils Holzenberger

Artificial Intelligence (AI) has huge impact on our daily lives with applications such as voice assistants, facial recognition, chatbots, autonomously driving cars, etc. Natural Language Processing (NLP) is a cross-discipline of AI and…

Computation and Language · Computer Science 2023-04-18 Klim Zaporojets