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Enriching existing medical terminology knowledge bases (KBs) is an important and never-ending work for clinical research because new terminology alias may be continually added and standard terminologies may be newly renamed. In this paper,…

Computation and Language · Computer Science 2019-09-04 Jiaying Zhang , Zhixing Zhang , Huanhuan Zhang , Zhiyuan Ma , Yangming Zhou , Ping He

Deep learning methods have significantly advanced medical image segmentation, yet their success hinges on large volumes of manually annotated data, which require specialized expertise for accurate labeling. Additionally, these methods often…

Image and Video Processing · Electrical Eng. & Systems 2024-09-04 Wangang Cheng , Guanghua He , Keli Hu , Mingyu Fang , Liang Dong , Zhong Li , Hancan Zhu

Adverse drug events (ADEs) are an important aspect of drug safety. Various texts such as biomedical literature, drug reviews, and user posts on social media and medical forums contain a wealth of information about ADEs. Recent studies have…

Computation and Language · Computer Science 2024-05-21 Shaoxiong Ji , Ya Gao , Pekka Marttinen

Gene expression profiles have been widely used to characterize patterns of cellular responses to diseases. As data becomes available, scalable learning toolkits become essential to processing large datasets using deep learning models to…

Machine Learning · Computer Science 2019-02-01 Ya Ju Fan , Jonathan E. Allen , Sam Ade Jacobs , Brian C. Van Essen

The COVID-19 has brought about a significant challenge to the whole of humanity, but with a special burden upon the medical community. Clinicians must keep updated continuously about symptoms, diagnoses, and effectiveness of emergent…

Computation and Language · Computer Science 2020-12-02 Andres Carvallo , Denis Parra , Gabriel Rada , Daniel Perez , Juan Ignacio Vasquez , Camilo Vergara

The ability to dynamically extend a model to new data and classes is critical for multiple organ and tumor segmentation. However, due to privacy regulations, accessing previous data and annotations can be problematic in the medical domain.…

Image and Video Processing · Electrical Eng. & Systems 2023-07-24 Yixiao Zhang , Xinyi Li , Huimiao Chen , Alan Yuille , Yaoyao Liu , Zongwei Zhou

Medical image segmentation remains challenging due to limited annotations for training, ambiguous anatomical features, and domain shifts. While vision-language models such as CLIP offer strong cross-modal representations, their potential…

Computer Vision and Pattern Recognition · Computer Science 2026-02-25 Taha Koleilat , Hojat Asgariandehkordi , Omid Nejati Manzari , Berardino Barile , Yiming Xiao , Hassan Rivaz

Fast, efficient and reliable algorithms for pairwise alignment of protein structures are in ever increasing demand for analyzing the rapidly growing data of protein structures. CLePAPS is a tool developed for this purpose. It distinguishes…

Quantitative Methods · Quantitative Biology 2007-11-01 Sheng Wang , Wei-Mou Zheng

We present a novel and effective technique for performing text coherence tasks while facilitating deeper insights into the data. Despite obtaining ever-increasing task performance, modern deep-learning approaches to NLP tasks often only…

Computation and Language · Computer Science 2019-08-09 Tanner Bohn , Yining Hu , Jinhang Zhang , Charles X. Ling

While Large Language Models (LLMs) become ever more dominant, classic pre-trained word embeddings sustain their relevance through computational efficiency and nuanced linguistic interpretation. Drawing from recent studies demonstrating that…

Computation and Language · Computer Science 2023-11-21 Haoran Zhao , Jake Ryland Williams

Precision oncology requires accurate molecular insights, yet obtaining these directly from genomics is costly and time-consuming for broad clinical use. Predicting complex molecular features and patient prognosis directly from routine…

Computer Vision and Pattern Recognition · Computer Science 2025-06-25 Cheng Jin , Fengtao Zhou , Yunfang Yu , Jiabo Ma , Yihui Wang , Yingxue Xu , Huajun Zhou , Hao Jiang , Luyang Luo , Luhui Mao , Zifan He , Xiuming Zhang , Jing Zhang , Ronald Chan , Herui Yao , Hao Chen

This study presents a hybrid deep learning architecture that integrates LSTM, CNN, and an Attention mechanism to enhance the classification of web content based on text. Pretrained GloVe embeddings are used to represent words as dense…

Computation and Language · Computer Science 2025-12-29 Mykola Kuz , Ihor Lazarovych , Mykola Kozlenko , Mykola Pikuliak , Andrii Kvasniuk

The main focus of image mining in the proposed method is concerned with the classification of brain tumor in the CT scan brain images. The major steps involved in the system are: pre-processing, feature extraction, association rule mining…

Computer Vision and Pattern Recognition · Computer Science 2010-03-25 P. Rajendran , M. Madheswaran

Brain tumors are highly heterogeneous in terms of their spatial and scaling characteristics, making tumor segmentation in medical images a difficult task that might result in wrong diagnosis and therapy. Automation of a task like tumor…

Image and Video Processing · Electrical Eng. & Systems 2025-01-24 Satyaki Roy Chowdhury , Golrokh Mirzaei

Several machine learning techniques for accurate detection of skin cancer from medical images have been reported. Many of these techniques are based on pre-trained convolutional neural networks (CNNs), which enable training the models based…

Computer Vision and Pattern Recognition · Computer Science 2021-05-18 Aqsa Saeed Qureshi , Teemu Roos

Accurate identification of breast cancer types plays a critical role in guiding treatment decisions and improving patient outcomes. This paper presents an artificial intelligence enabled tool designed to aid in the identification of breast…

Image and Video Processing · Electrical Eng. & Systems 2025-05-28 Neil Chaudhary , Zaynah Dhunny

Computational pathology tasks have some unique characterises such as multi-gigapixel images, tedious and frequently uncertain annotations, and unavailability of large number of cases [13]. To address some of these issues, we present Deep…

Image and Video Processing · Electrical Eng. & Systems 2023-01-24 Nima Hatami

One of the most challenges in medical imaging is the lack of data and annotated data. It is proven that classical segmentation methods such as U-NET are useful but still limited due to the lack of annotated data. Using a weakly supervised…

Image and Video Processing · Electrical Eng. & Systems 2020-03-20 Amine Amyar , Romain Modzelewski , Pierre Vera , Vincent Morard , Su Ruan

The ability to describe images with natural language sentences is the hallmark for image and language understanding. Such a system has wide ranging applications such as annotating images and using natural sentences to search for images.In…

Machine Learning · Computer Science 2016-01-15 Afroze Ibrahim Baqapuri

Neural word representations have proven useful in Natural Language Processing (NLP) tasks due to their ability to efficiently model complex semantic and syntactic word relationships. However, most techniques model only one representation…

Computation and Language · Computer Science 2015-11-23 Andrew Trask , Phil Michalak , John Liu
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