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The most sophisticated existing methods to generate 3D isotropic super-resolution (SR) from non-isotropic electron microscopy (EM) are based on learned dictionaries. Unfortunately, none of the existing methods generate practically…

Computer Vision and Pattern Recognition · Computer Science 2017-06-13 Larissa Heinrich , John A. Bogovic , Stephan Saalfeld

In this paper, we demonstrate a computationally efficient new approach based on deep learning (DL) techniques for analysis, design, and optimization of electromagnetic (EM) nanostructures. We use the strong correlation among features of a…

Machine Learning · Computer Science 2020-02-13 Yashar Kiarashinejad , Sajjad Abdollahramezani , Ali Adibi

Volumetric imaging by fluorescence microscopy is often limited by anisotropic spatial resolution from inferior axial resolution compared to the lateral resolution. To address this problem, here we present a deep-learning-enabled…

Computer Vision and Pattern Recognition · Computer Science 2022-07-06 Hyoungjun Park , Myeongsu Na , Bumju Kim , Soohyun Park , Ki Hean Kim , Sunghoe Chang , Jong Chul Ye

Fluorescence microscopy images usually show severe anisotropy in axial versus lateral resolution. This hampers downstream processing, i.e. the automatic extraction of quantitative biological data. While deconvolution methods and other…

Computer Vision and Pattern Recognition · Computer Science 2017-04-06 Martin Weigert , Loic Royer , Florian Jug , Gene Myers

In this paper, we propose an efficient self-supervised arbitrary-scale super-resolution (SR) framework to reconstruct isotropic magnetic resonance (MR) images from anisotropic MRI inputs without involving external training data. The…

Image and Video Processing · Electrical Eng. & Systems 2023-05-03 Haonan Zhang , Yuhan Zhang , Qing Wu , Jiangjie Wu , Zhiming Zhen , Feng Shi , Jianmin Yuan , Hongjiang Wei , Chen Liu , Yuyao Zhang

Electron microscopy (EM) images exhibit anisotropic axial resolution due to the characteristics inherent to the imaging modality, presenting challenges in analysis and downstream tasks.In this paper, we propose a diffusion-model-based…

Computer Vision and Pattern Recognition · Computer Science 2023-08-04 Kyungryun Lee , Won-Ki Jeong

Deep learning (DL) has emerged as a tool for improving accelerated MRI reconstruction. A common strategy among DL methods is the physics-based approach, where a regularized iterative algorithm alternating between data consistency and a…

Image and Video Processing · Electrical Eng. & Systems 2020-07-03 Burhaneddin Yaman , Seyed Amir Hossein Hosseini , Steen Moeller , Jutta Ellermann , Kâmil Uǧurbil , Mehmet Akçakaya

Although high resolution isotropic 3D medical images are desired in clinical practice, their acquisition is not always feasible. Instead, lower resolution images are upsampled to higher resolution using conventional interpolation methods.…

Image and Video Processing · Electrical Eng. & Systems 2020-10-27 Jörg Sander , Bob D. de Vos , Ivana Išgum

Deep learning (DL) has emerged as a powerful tool for accelerated MRI reconstruction, but often necessitates a database of fully-sampled measurements for training. Recent self-supervised and unsupervised learning approaches enable training…

Image and Video Processing · Electrical Eng. & Systems 2023-11-30 Burhaneddin Yaman , Seyed Amir Hossein Hosseini , Mehmet Akçakaya

Dual-energy computed tomography (DECT) enables material-specific imaging through acquisitions at two different X-ray energy spectra. Material decomposition from DECT data is an ill-posed inverse problem that is highly sensitive to noise…

High spatial and temporal resolution across the whole brain is essential to accurately resolve neural activities in fMRI. Therefore, accelerated imaging techniques target improved coverage with high spatio-temporal resolution. Simultaneous…

Image and Video Processing · Electrical Eng. & Systems 2021-05-13 Omer Burak Demirel , Burhaneddin Yaman , Logan Dowdle , Steen Moeller , Luca Vizioli , Essa Yacoub , John Strupp , Cheryl A. Olman , Kâmil Uğurbil , Mehmet Akçakaya

We present a self-supervised learning-based pipeline for dense 3D reconstruction from full-length monocular endoscopic videos without a priori modeling of anatomy or shading. Our method only relies on unlabeled monocular endoscopic videos…

Computer Vision and Pattern Recognition · Computer Science 2019-09-10 Xingtong Liu , Ayushi Sinha , Masaru Ishii , Gregory D. Hager , Russell H. Taylor , Mathias Unberath

Supervised deep-learning (SDL) techniques with paired training datasets have been widely studied for X-ray computed tomography (CT) image reconstruction. However, due to the difficulties of obtaining paired training datasets in clinical…

Image and Video Processing · Electrical Eng. & Systems 2025-01-06 Gaofeng Chen , Yaoduo Zhang , Li Huang , Pengfei Wang , Wenyu Zhang , Dong Zeng , Jianhua Ma , Ji He

A unified self-supervised and supervised deep learning framework for PET image reconstruction is presented, including deep-learned filtered backprojection (DL-FBP) for sinograms, deep-learned backproject then filter (DL-BPF) for…

Image and Video Processing · Electrical Eng. & Systems 2023-02-28 Andrew J. Reader

While functional Magnetic Resonance Imaging (fMRI) offers valuable insights into cognitive processes, its inherent spatial limitations pose challenges for detailed analysis of the fine-grained functional architecture of the brain. More…

Image and Video Processing · Electrical Eng. & Systems 2025-02-25 Fernando Pérez-Bueno , Hongwei Bran Li , Matthew S. Rosen , Shahin Nasr , Cesar Caballero-Gaudes , Juan Eugenio Iglesias

The inability to acquire clean high-resolution (HR) electron microscopy (EM) images over a large brain tissue volume hampers many neuroscience studies. To address this challenge, we propose a deep-learning-based image super-resolution (SR)…

Computer Vision and Pattern Recognition · Computer Science 2024-01-29 Mohammad Khateri , Morteza Ghahremani , Alejandra Sierra , Jussi Tohka

Three-dimensional microscopy is often limited by anisotropic spatial resolution, resulting in lower axial resolution than lateral resolution. Current State-of-The-Art (SoTA) isotropic reconstruction methods utilizing deep neural networks…

Image and Video Processing · Electrical Eng. & Systems 2023-06-22 Mingjie Pan , Yulu Gan , Fangxu Zhou , Jiaming Liu , Aimin Wang , Shanghang Zhang , Dawei Li

High-quality 3D fetal brain MRI reconstruction from motion-corrupted 2D slices is crucial for clinical diagnosis. Reliable slice-to-volume registration (SVR)-based motion correction and super-resolution reconstruction (SRR) methods are…

Image and Video Processing · Electrical Eng. & Systems 2025-05-27 Jiangjie Wu , Lixuan Chen , Zhenghao Li , Xin Li , Saban Ozturk , Lihui Wang , Rongpin Wang , Hongjiang Wei , Yuyao Zhang

Electron tomography (ET) plays an important role in the three-dimensional (3D) characterization of nanomaterials. However, under limited-angle and sparse-view conditions, conventional algorithms produce degraded reconstructions, which…

Image and Video Processing · Electrical Eng. & Systems 2026-05-27 Serge Brosset , Daniel del Pozo Bueno , Thomas David , Laure Guetaz , Philippe Ciuciu , Zineb Saghi

Recently, a variety of approaches has been enriching the field of Remote Sensing (RS) image processing and analysis. Unfortunately, existing methods remain limited faced to the rich spatio-spectral content of today's large datasets. It…

Computer Vision and Pattern Recognition · Computer Science 2018-08-15 Amina Ben Hamida , A Benoit , Patrick Lambert , Chokri Ben Amar
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