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The quest for efficient and robust deep learning models for molecular systems representation is increasingly critical in scientific exploration. The advent of message passing neural networks has marked a transformative era in graph-based…

Computational Physics · Physics 2026-01-05 Jian Chang , Shuze Zhu

We propose a novel robust decentralized graph clustering algorithm that is provably equivalent to the popular spectral clustering approach. Our proposed method uses the existing wave equation clustering algorithm that is based on…

Machine Learning · Computer Science 2024-02-05 Hongyu Zhu , Stefan Klus , Tuhin Sahai

Persistent homology, a fundamental technique within Topological Data Analysis (TDA), captures structural and shape characteristics of graphs, yet encounters computational difficulties when applied to dynamic directed graphs. This paper…

Machine Learning · Computer Science 2024-08-20 Hao Li , Hao Jiang , Jiajun Fan , Dongsheng Ye , Liang Du

Graph neural networks have been a powerful tool for mesh-based physical simulation. To efficiently model large-scale systems, existing methods mainly employ hierarchical graph structures to capture multi-scale node relations. However, these…

Machine Learning · Computer Science 2025-05-22 Huayu Deng , Xiangming Zhu , Yunbo Wang , Xiaokang Yang

Traditional Graph Neural Networks (GNNs) rely on message passing, which amounts to permutation-invariant local aggregation of neighbour features. Such a process is isotropic and there is no notion of `direction' on the graph. We present a…

Machine Learning · Computer Science 2022-05-03 Ahmed A. A. Elhag , Gabriele Corso , Hannes Stärk , Michael M. Bronstein

Continuous graph neural models based on differential equations have expanded the architecture of graph neural networks (GNNs). Due to the connection between graph diffusion and message passing, diffusion-based models have been widely…

Machine Learning · Computer Science 2024-04-01 Kaiyuan Cui , Xinyan Wang , Zicheng Zhang , Weichen Zhao

Geometric shape classification of vector polygons remains a challenging task in spatial analysis. Previous studies have primarily focused on deep learning approaches for rasterized vector polygons, while the study of discrete polygon…

Computer Vision and Pattern Recognition · Computer Science 2025-06-13 Zexian Huang , Kourosh Khoshelham , Martin Tomko

This paper studies asynchronous message passing (AMP), a new paradigm for applying neural network based learning to graphs. Existing graph neural networks use the synchronous distributed computing model and aggregate their neighbors in each…

Machine Learning · Computer Science 2022-05-25 Lukas Faber , Roger Wattenhofer

Graph neural networks (GNNs) have demonstrated significant promise in modelling relational data and have been widely applied in various fields of interest. The key mechanism behind GNNs is the so-called message passing where information is…

Machine Learning · Computer Science 2023-10-31 Andi Han , Dai Shi , Lequan Lin , Junbin Gao

Directed Acyclic Graphs (DAGs) are central to uncovering causal structure in complex systems, yet learning a single DAG from data is often challenging: model uncertainty, finite samples, and a combinatorially large search space frequently…

Methodology · Statistics 2026-05-19 Yunan Wu , Yue Wang , Chunlin Li , Chenglong Ye

Graph convolutional learning has led to many exciting discoveries in diverse areas. However, in some applications, traditional graphs are insufficient to capture the structure and intricacies of the data. In such scenarios, multigraphs…

Machine Learning · Computer Science 2023-04-26 Landon Butler , Alejandro Parada-Mayorga , Alejandro Ribeiro

Dynamic graphs refer to graphs whose structure dynamically changes over time. Despite the benefits of learning vertex representations (i.e., embeddings) for dynamic graphs, existing works merely view a dynamic graph as a sequence of changes…

Machine Learning · Computer Science 2023-11-02 Yu Yang , Hongzhi Yin , Jiannong Cao , Tong Chen , Quoc Viet Hung Nguyen , Xiaofang Zhou , Lei Chen

Graph-based Retrieval-Augmented Generation (RAG) systems leverage interconnected knowledge structures to capture complex relationships that flat retrieval struggles with, enabling multi-hop reasoning. Yet most existing graph-based methods…

Information diffusion prediction is a fundamental task for understanding the information propagation process. It has wide applications in such as misinformation spreading prediction and malicious account detection. Previous works either…

Social and Information Networks · Computer Science 2020-06-11 Chunyuan Yuan , Jiacheng Li , Wei Zhou , Yijun Lu , Xiaodan Zhang , Songlin Hu

Recently deep learning has been successfully applied to unsupervised active learning. However, current method attempts to learn a nonlinear transformation via an auto-encoder while ignoring the sample relation, leaving huge room to design…

Machine Learning · Computer Science 2021-11-09 Handong Ma , Changsheng Li , Xinchu Shi , Ye Yuan , Guoren Wang

Learning topological representation of a network in dynamic environments has recently attracted considerable attention due to the time-evolving nature of many real-world networks i.e. nodes/links might be added/removed as time goes on.…

Social and Information Networks · Computer Science 2019-07-30 Chengbin Hou , Han Zhang , Ke Tang , Shan He

In this work we introduce Dynamic Random Geometric Graphs as a basic rough model for mobile wireless sensor networks, where communication distances are set to the known threshold for connectivity of static random geometric graphs. We…

Discrete Mathematics · Computer Science 2007-05-23 Josep Diaz , Dieter Mitsche , Xavier Perez

Constructing appropriate representations of molecules lies at the core of numerous tasks such as material science, chemistry and drug designs. Recent researches abstract molecules as attributed graphs and employ graph neural networks (GNN)…

Machine Learning · Computer Science 2021-07-29 Jianwen Chen , Shuangjia Zheng , Ying Song , Jiahua Rao , Yuedong Yang

We study a discrete-time consensus model in which agents iteratively update their states through interactions on a dynamic social network. At each step, a single agent is selected asynchronously and averages the values of its current…

Systems and Control · Computer Science 2025-12-29 Hsin-Lun Li

Establishing dense correspondence between two images is a fundamental computer vision problem, which is typically tackled by matching local feature descriptors. However, without global awareness, such local features are often insufficient…

Computer Vision and Pattern Recognition · Computer Science 2022-12-23 Zhengfei Kuang , Jiaman Li , Mingming He , Tong Wang , Yajie Zhao
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