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In a multiscale modeling approach, we present computer simulation results for a rectifying bipolar nanopore on two modeling levels. In an all-atom model, we use explicit water to simulate ion transport directly with the molecular dynamics…

Mesoscale and Nanoscale Physics · Physics 2018-03-13 Zoltán Ható , Mónika Valiskó , Tamás Kristóf , Dirk Gillespie , Dezső Boda

Light-activated self-propelled colloids are synthesized and their active motion is studied using optical microscopy. We propose a versatile route using different photoactive materials, and demonstrate a multiwavelength activation and…

Soft Condensed Matter · Physics 2014-10-28 J. Palacci , S. Sacanna , S. -H. Kim , G. -R. Yi , D. J. Pine , P. M. Chaikin

We consider a lattice model of active matter with exclusion and derive its hydrodynamic description exactly. The hydrodynamic limit leads to an integro-differential equation for the density of particles with a given orientation. Volume…

Mathematical Physics · Physics 2023-10-31 James Mason , Clement Erignoux , Robert Jack , Maria Bruna

The ionic conductivity of mixed alkali glasses exhibits a deep minimum as a function of the relative concentrations of the two alkali ions. To study this behaviour we consider a simple one-dimensional model for asymmetric diffusion of two…

Condensed Matter · Physics 2008-02-03 Sven Sandow , Steffen Trimper , David Mukamel

A variety of computational models have been developed to describe active matter at different length and time scales. The diversity of the methods and the challenges in modeling active matter---ranging from molecular motors and cytoskeletal…

Soft Condensed Matter · Physics 2020-04-21 M Reza Shaebani , Adam Wysocki , Roland G Winkler , Gerhard Gompper , Heiko Rieger

The presence of solvent tunes many properties of a molecule, such as its ground and excited state geometry, dipole moment, excitation energy, and absorption spectrum. Because the energy of the system will vary depending on the solvent…

Chemical Physics · Physics 2018-09-13 Tim J. Zuehlsdorff , Christine M. Isborn

In solution, electrically like-charged particles can experience a strong and long-ranged attraction that leads to the formation of stable, slowly reorganizing clusters. The attractive force underpinning this spontaneous organization process…

Soft Condensed Matter · Physics 2026-01-14 Sida Wang , Angela Le , Rowan Walker-Gibbons , Madhavi Krishnan

By analytically solving some simple models of phase-ordering kinetics, we suggest a mechanism for the onset of non-equilibrium behaviour in colloid-polymer mixtures. These mixtures can function as models of atomic systems; their physics…

Soft Condensed Matter · Physics 2016-08-31 R. M. L. Evans , W. C. K. Poon

Dusty plasma medium turns out to be an ideal system for studying the strongly coupled behavior of matter. The large size and slow response make their dynamics suitable to be captured through simple diagnostic tools. Furthermore, as the…

Plasma Physics · Physics 2024-08-30 Aman Singh Katariya , Amita Das , Animesh Sharma , Bibhuti Bhushan Sahu

Colloidal mixtures represent a versatile model system to study transport in complex environments. They allow for a systematic variation of the control parameters, namely size ratio, total volume fraction and composition. We study the…

Active matter comprised of many self-driven units can exhibit emergent collective behaviors such as pattern formation and phase separation in both biologica and synthetic systems. While these behaviors are increasingly well understood for…

Soft Condensed Matter · Physics 2015-07-27 Syeda Sabrina , Matthew Spellings , Sharon C. Glotzer , Kyle J. M. Bishop

The dynamics of a probe particle is highly influenced by the nature of the bath in which it is immersed. In particular, baths composed by active (e.g., self-propelled) particles induce intriguing out-of-equilibrium effects on tracer's…

Statistical Mechanics · Physics 2023-10-04 Daniel Maria Busiello , Matteo Ciarchi , Ivan Di Terlizzi

Systems containing active components are intrinsically out of equilibrium, while binary mixtures reach their equilibrium configuration when complete phase separation is achieved. Active particles are found to stabilise non-equilibrium…

Soft Condensed Matter · Physics 2025-03-11 Javier Diaz , Ignacio Pagonabarraga

We study the behaviour of interacting self-propelled particles, whose self-propulsion speed decreases with their local density. By combining direct simulations of the microscopic model with an analysis of the hydrodynamic equations obtained…

Statistical Mechanics · Physics 2012-06-25 F. D. C. Farrell , J. Tailleur , D. Marenduzzo , M. C. Marchetti

Active matter spans a wide range of time and length scales, from groups of cells and synthetic self-propelled particles to schools of fish, flocks of birds, or even human crowds. The theoretical framework describing these systems has shown…

Natural phenomena frequently involve a very large number of interacting molecules moving in confined regions of space. Cellular transport by motor proteins is an example of such collective behavior. We derive a deterministic compartmental…

Subcellular Processes · Quantitative Biology 2017-11-01 Yoram Zarai , Michael Margaliot , Anatoly B. Kolomeisky

Colloidal gels are prime examples of functional materials exhibiting disordered, amorphous, yet meta-stable forms. They maintain stability through short-range attractive forces and their material properties are tunable by external forces.…

The connection between fundamental interactions acting in molecules in a fluid and macroscopically measured properties, such as the viscosity between colloidal particles coated with polymers, is studied here. The role that hydrodynamic and…

Soft Condensed Matter · Physics 2015-09-02 A. Gama Goicochea , M. A. Balderas Altamirano , R. Lopez-Esparza , M. A. Waldo , E. Perez

Behavior of the mixture of particles and dimers moving with different jump rates at reconstructed surfaces is described. Collective diffusion coefficient is calculated by the variational approach. Anisotropy of the collective particle…

Statistical Mechanics · Physics 2014-05-12 Marcin Mińkowski , Magdalena A. Załuska Kotur

Hydrodynamic interactions driven by particle activity are ubiquitous in active colloidal systems. Although these interactions are strongly influenced by the interfacial actuation mechanism and geometry of the swimming particles, theoretical…

Soft Condensed Matter · Physics 2025-06-17 Anson G. Thambi , William E. Uspal