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Across many domains, large swaths of digital assets are being stored across distributed data repositories, e.g., the DANDI Archive [8]. The distribution and diversity of these repositories impede researchers from formally defining…

Across the life sciences, an ongoing effort over the last 50 years has made data and methods more reproducible and transparent. This openness has led to transformative insights and vastly accelerated scientific progress. For example,…

Neurons and Cognition · Quantitative Biology 2026-02-25 Colleen J. Gillon , Cody Baker , Ryan Ly , Edoardo Balzani , Bingni W. Brunton , Manuel Schottdorf , Satrajit Ghosh , Nima Dehghani

As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available…

Making all data for any observation or experiment openly available is a defining feature of empirical science (e.g., nullius in verba, the motto of the Royal Society). It enhances transparency, reproducibility, and societal trust. While…

Neurons and Cognition · Quantitative Biology 2022-12-19 Saskia E. J. de Vries , Joshua H. Siegle , Christof Koch

The reproducibility of scientific research has become a point of critical concern. We argue that openness and transparency are critical for reproducibility, and we outline an ecosystem for open and transparent science that has emerged…

Computers and Society · Computer Science 2018-09-27 Russell A. Poldrack , Krzysztof J. Gorgolewski , Gael Varoquaux

Data standardization has become one of the leading methods neuroimaging researchers rely on for data sharing and reproducibility. Data standardization promotes a common framework through which researchers can utilize others' data. Yet, as…

To take advantage of recent and ongoing advances in large-scale computational methods, and to preserve the scientific data created by publicly funded research projects, data archives must be created as well as standards for specifying,…

Quantitative Methods · Quantitative Biology 2022-03-08 Arnaud Delorme , Dung Truong , Choonhan Youn , Subha Sivagnanam , Kenneth Yoshimoto , Russell A. Poldrack , Amit Majumdar , Scott Makeig

A novel continuous-time framework is proposed for modeling neuromorphic image sensors in the form of an initial canonical representation with analytical tractability. Exact simulation algorithms are developed in parallel with closed-form…

Applications · Statistics 2025-04-04 Aaron J. Hendrickson , David P. Haefner

Digital computational outputs are now ubiquitous in the research workflow and the way in which these data are stored and cataloged is becoming more standardized across fields of research. However, even with accessible data and code, the…

Digital Libraries · Computer Science 2025-08-19 Sabar Dasgupta , Paul Nuyujukian

Neuroscience research has evolved to generate increasingly large and complex experimental data sets, and advanced data science tools are taking on central roles in neuroscience research. Neurodata Without Borders (NWB), a standard language…

Neurons and Cognition · Quantitative Biology 2024-01-23 Andrea Pierré , Tuan Pham , Jonah Pearl , Sandeep Robert Datta , Jason T. Ritt , Alexander Fleischmann

Background: The human mind is multimodal. Yet most behavioral studies rely on century-old measures such as task accuracy and latency. To create a better understanding of human behavior and brain functionality, we should introduce other…

Machine Learning · Computer Science 2021-11-30 Moein Razavi , Vahid Janfaza , Takashi Yamauchi , Anton Leontyev , Shanle Longmire-Monford , Joseph Orr

As the amount of scientific data continues to grow at ever faster rates, the research community is increasingly in need of flexible computational infrastructure that can support the entirety of the data science lifecycle, including…

Computers and Society · Computer Science 2016-04-12 Robert L. Grossman , Allison Heath , Mark Murphy , Maria Patterson , Walt Wells

The emergence of sixth-generation (6G) networks has spurred the development of novel testbeds, including sub-THz networks, cell-free systems, and 6G simulators. To maximize the benefits of these systems, it is crucial to make the generated…

Recent advances in Internet-of-Things (IoT) technologies have sparked significant interest towards developing learning-based sensing applications on embedded edge devices. These efforts, however, are being challenged by the complexities of…

Systems and Control · Electrical Eng. & Systems 2024-02-23 Abdulrahman Bukhari , Seyedmehdi Hosseinimotlagh , Hyoseung Kim

Big imaging data is becoming more prominent in brain sciences across spatiotemporal scales and phylogenies. We have developed a computational ecosystem that enables storage, visualization, and analysis of these data in the cloud, thusfar…

At this moment, databanks worldwide contain brain images of previously unimaginable numbers. Combined with developments in data science, these massive data provide the potential to better understand the genetic underpinnings of brain…

Machine Learning · Statistics 2025-01-30 Santiago Silva , Boris Gutman , Eduardo Romero , Paul M Thompson , Andre Altmann , Marco Lorenzi

This paper proposes a novel framework for recurrent neural networks (RNNs) inspired by the human memory models in the field of cognitive neuroscience to enhance information processing and transmission between adjacent RNNs' units. The…

Neural and Evolutionary Computing · Computer Science 2018-06-05 Xi Chen , Zhihong Deng , Gehui Shen , Ting Huang

The scientific literature is a rich source of information for data mining with conceptual knowledge graphs; the open science movement has enriched this literature with complementary source code that implements scientific models. To exploit…

Machine Learning · Computer Science 2019-08-27 Kun Cao , James Fairbanks

The promise of large-scale, high-resolution datasets from Electron Microscopy (EM) and X-ray Microtomography (XRM) lies in their ability to reveal neural structures and synaptic connectivity, which is critical for understanding the brain.…

The incorporation of neuroimaging techniques such as electroenchephalography (EEG) and functional near-infrared spectroscopy (fNIRS) has provided new opportunities for the analysis of dynamic brain processes involved in cognitive and motor…

Neurons and Cognition · Quantitative Biology 2026-03-25 Zaineb Ajra , Grégoire Vergotte , Stéphane Perrey , Lilian Evra , Simon Pla , Gérard Dray , Jacky Montmain , Binbin Xu
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