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We present two different approaches for modeling the spread of the COVID-19 pandemic. Both approaches are based on the population classes susceptible, exposed, infectious, quarantined, and recovered and allow for an arbitrary number of…

Populations and Evolution · Quantitative Biology 2021-05-11 Constantia Alexandrou , Vangelis Harmandaris , Anastasios Irakleous , Giannis Koutsou , Nikos Savva

We present a compartmental meta-population model for the spread of Covid-19 in India. Our model simulates populations at a district or state level using an epidemiological model that is appropriate to Covid-19. Different districts are…

We study the problem of estimating the parameters (i.e., infection rate and recovery rate) governing the spread of epidemics in networks. Such parameters are typically estimated by measuring various characteristics (such as the number of…

Systems and Control · Electrical Eng. & Systems 2021-05-12 Lintao Ye , Philip E. Paré , Shreyas Sundaram

The emergence of an epidemic evokes the need to monitor its spread and assess and validate any mitigation measures enacted by governments and administrative bodies in real time. We present here a method to observe and quantify this spread…

Populations and Evolution · Quantitative Biology 2024-11-06 Justin Trujillo , Valerica Raicu

Since the beginning of the COVID-19 pandemic, many dashboards have emerged as useful tools to monitor the evolution of the pandemic, inform the public, and assist governments in decision making. Our goal is to develop a globally applicable…

The COVID-19 pandemic has led to significant changes in how people are currently living their lives. To determine how to best reduce the effects of the pandemic and start reopening societies, governments have drawn insights from…

Other Quantitative Biology · Quantitative Biology 2020-09-08 Heather Z. Brooks , Unchitta Kanjanasaratool , Yacoub H. Kureh , Mason A. Porter

Predicting the spread and containment of COVID-19 is a challenge of utmost importance that the broader scientific community is currently facing. One of the main sources of difficulty is that a very limited amount of daily COVID-19 case data…

Machine Learning · Computer Science 2020-04-21 Hanbaek Lyu , Christopher Strohmeier , Georg Menz , Deanna Needell

There is a continuing debate on relative benefits of various mitigation and suppression strategies aimed to control the spread of COVID-19. Here we report the results of agent-based modelling using a fine-grained computational simulation of…

Populations and Evolution · Quantitative Biology 2020-11-12 Sheryl L. Chang , Nathan Harding , Cameron Zachreson , Oliver M. Cliff , Mikhail Prokopenko

Standard epidemic models based on compartmental differential equations are investigated under continuous parameter change as external forcing. We show that seasonal modulation of the contact parameter superimposed a monotonic decay needs a…

Populations and Evolution · Quantitative Biology 2020-08-13 Tamás Kovács

The COVID-19 pandemic is the most significant global crisis since World War II that affected almost all the countries of our planet. To control the COVID-19 pandemic outbreak, it is necessary to understand how the virus is transmitted to a…

Populations and Evolution · Quantitative Biology 2022-02-02 Saheb Pal , Indrajit Ghosh

During an infectious disease outbreak, biases in the data and complexities of the underlying dynamics pose significant challenges in mathematically modelling the outbreak and designing policy. Motivated by the ongoing response to COVID-19,…

Interpreting deep learning time series models is crucial in understanding the model's behavior and learning patterns from raw data for real-time decision-making. However, the complexity inherent in transformer-based time series models poses…

Researchers have shown that even simple empirical models stemming from biological growth modeling have the potential to provide useful information on the development and severity of ongoing epidemics since they can be employed as tools for…

Populations and Evolution · Quantitative Biology 2020-04-28 Evagoras Xydas , Konstantinos Kostas

Mathematical models of SARS-CoV-2 spread are used for guiding the design of mitigation steps aimed at containing and decelerating the contagion, and at identifying impending breaches of health care system surge capacity. The challenges of…

Populations and Evolution · Quantitative Biology 2020-06-17 Daniela Calvetti , Alexander Hoover , Johnie Rose , Erkki Somersalo

The spread of COVID-19 has become a significant and troubling aspect of society in 2020. With millions of cases reported across countries, new outbreaks have occurred and followed patterns of previously affected areas. Many disease…

Computation and Language · Computer Science 2020-10-19 Sharon Levy , William Yang Wang

The unprecedented behavioural responses of societies have been evidently shaping the COVID-19 pandemic, yet it is a significant challenge to accurately monitor the continuously changing social mixing patterns in real-time. Contact matrices,…

Physics and Society · Physics 2021-02-24 Júlia Koltai , Orsolya Vásárhelyi , Gergely Röst , Márton Karsai

We investigate the problem of estimating the distribution of the individual reproduction number governing the COVID-19 pandemic. Under the assumption that this random variable follows a Negative Binomial distribution, we focus on…

Applications · Statistics 2021-01-21 Alexander Braumann , Jonas Krampe , Jens-Peter Kreiss , Efstathios Paparoditis

We consider an age-structured epidemic model with two basic public health interventions: (i) identifying and isolating symptomatic cases, and (ii) tracing and quarantine of the contacts of identified infectives. The dynamics of the infected…

Populations and Evolution · Quantitative Biology 2014-03-13 Xi Huo

Across the world, scholars are racing to predict the spread of the novel coronavirus, COVID-19. Such predictions are often pursued by numerically simulating epidemics with a large number of plausible combinations of relevant parameters. It…

Physics and Society · Physics 2021-02-03 Jonas L. Juul , Kaare Græsbøll , Lasse Engbo Christiansen , Sune Lehmann

The recent COVID-19 pandemic has led to an increasing interest in the modeling and analysis of infectious diseases. The pandemic has made a significant impact on the way we behave and interact in our daily life. The past year has witnessed…

Computer Science and Game Theory · Computer Science 2021-06-17 Shutian Liu , Yuhan Zhao , Quanyan Zhu