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Coupled partial differential equations defined on domains with different dimensionality are usually called mixed dimensional PDEs. We address mixed dimensional PDEs on three-dimensional (3D) and one-dimensional domains, giving rise to a…

Numerical Analysis · Mathematics 2020-04-07 Miroslav Kuchta , Federica Laurino , Kent-Andre Mardal , Paolo Zunino

The mechanical properties of biological materials are spatially heterogeneous. Typical tissues are made up of a spanning fibrous extracellular matrix in which various inclusions, such as living cells, are embedded. While the influence of…

Soft Condensed Matter · Physics 2025-09-04 Jordan L. Shivers , Jingchen Feng , Fred C. MacKintosh

In this paper, phase field models are developed for multi-component vesicle membranes with different lipid compositions and membranes with free boundary. These models are used to simulate the deformation of membranes under the elastic…

Biological Physics · Physics 2007-05-23 Xiaoqiang Wang , Qiang Du

In this paper we propose and test the validity of simple and easy-to-implement algorithms within the immersed boundary framework geared towards large scale simulations involving thousands of deformable bodies in highly turbulent flows.…

Computational Physics · Physics 2018-09-26 Vamsi Spandan , Detlef Lohse , Marco D. de Tullio , Roberto Verzicco

We present a hybrid Eulerian-Lagrangian method for the direct simulation of three-dimensional, heterogeneous structures made of soft fibers and immersed in incompressible viscous fluids. Fiber-based organization of matter is pervasive in…

Computational Physics · Physics 2024-01-19 Arman Tekinalp , Yashraj Bhosale , Songyuan Cui , Fan Kiat Chan , Mattia Gazzola

We present a distributed Lagrange multiplier formulation of the Finite Element Immersed Boundary Method to couple incompressible fluids with compressible solids. This is a generalization of the formulation presented in Heltai and Costanzo…

Numerical Analysis · Mathematics 2017-12-08 Daniele Boffi , Lucia Gastaldi , Luca Heltai

We study a recent formulation for fluid-structure interaction problems based on the use of a distributed Lagrange multiplier in the spirit of the fictitious domain approach. In this paper, we focus our attention on a crucial computational…

Numerical Analysis · Mathematics 2022-10-26 Daniele Boffi , Fabio Credali , Lucia Gastaldi

We extend the divergence preserving cut finite element method presented in [T. Frachon, P. Hansbo, E. Nilsson, S. Zahedi, SIAM J. Sci. Comput., 46 (2024)] for the Darcy interface problem to unfitted outer boundaries. We impose essential…

Numerical Analysis · Mathematics 2024-08-20 Thomas Frachon , Erik Nilsson , Sara Zahedi

Stratified fluids composed of a sequence of alternate layers show interesting macroscopic properties, which may be quite different from those of the individual constituent fluids. On a macroscopic scale, such systems can be considered a…

Numerical Analysis · Mathematics 2026-01-30 Simone Chiocchetti , Giovanni Russo

We propose a multiscale computational method for thin-layer flows of complex fluids, termed the synchronized molecular dynamics (SMD) method, which directly couples local molecular dynamics (MD) simulations with a macroscopic lubrication…

Fluid Dynamics · Physics 2026-04-28 Shugo Yasuda , Kotaro Oda , Fumito Muragaki , Yuta Taketa , Masashi Iwayama , Tomohide Ina

This paper is concerned with the Boundary Element simulation of elastic domains that contain thin inclusions that have elastic material properties, which are different to the domain. With thin inclusions we mean inclusions with extreme…

Numerical Analysis · Mathematics 2025-05-27 Vincenzo Mallardo , Christian Dunser , Gernot Beer

We present an approach to the coupling of mixed-dimensional continua by employing the mathematically enriched linear Cosserat micropolar model. The kinematical reduction of the model to lower dimensional domains leaves its fundamental…

Numerical Analysis · Mathematics 2024-09-19 Adam Sky , Jack S. Hale , Andreas Zilian , Stéphane P. A. Bordas , Patrizio Neff

Viscoelastic surface rheology plays an important role in multiphase systems. A typical example is the actin cortex which surrounds most animal cells. It shows elastic properties for short time scales and behaves viscous for longer time…

Fluid Dynamics · Physics 2021-06-01 Eloy de Kinkelder , Leonard Sagis , Sebastian Aland

Accurate numerical simulation of fault and fracture mechanics is critical for the performance and safety assessment of many subsurface systems. The discretized representation of discontinuity surfaces and the robust simulation of their…

Numerical Analysis · Mathematics 2026-03-20 Daniele Moretto , Andrea Franceschini , Massimiliano Ferronato

The immersed boundary (IB) method is a mathematical and numerical framework for problems of fluid-structure interaction, treating the particular case in which an elastic structure is immersed in a viscous incompressible fluid. The IB…

Computational Engineering, Finance, and Science · Computer Science 2017-03-29 Boyce E. Griffith

The numerical approximation of incompressible fluid-structure interaction problems with Lagrange multiplier is generally based on strongly coupled schemes. This delivers unconditional stability but at the expense of solving a…

Numerical Analysis · Mathematics 2020-07-10 Michele Annese , Miguel A. Fernández , Lucia Gastaldi

We develop numerical multiscale methods for viscous boundary layer flow. The goal is to derive effective boundary conditions, or wall laws, through high resolution simulations localized to the boundary coupled to a coarser simulation in the…

Numerical Analysis · Mathematics 2021-10-14 Sean Carney , Björn Engquist

As two-dimensional fluid shells, lipid bilayer membranes resist bending and stretching but are unable to sustain shear stresses. This property gives membranes the ability to adopt dramatic shape changes. In this paper, a finite element…

Biological Physics · Physics 2009-11-13 Lin Ma , William S. Klug

Modeling membrane interactions with arbitrarily shaped colloidal particles, such as environmental micro- and nanoplastics, at the cell scale remains particularly challenging, owing to the complexity of particle geometries and the need to…

Soft Condensed Matter · Physics 2025-09-15 Didarul Ahasan Redwan , Justin Reicher , Xin Yong

This work outlines a new multi-physics-compatible immersed rigid body method for Eulerian finite-volume simulations. To achieve this, rigid bodies are represented as a diffuse scalar field and an interface seeding method is employed to…

Computational Physics · Physics 2022-03-15 Tim Wallis , Philip Barton , Nikolaos Nikiforakis