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In quorum sensing (QS), bacteria exchange molecular signals to work together. An analytically-tractable model is presented for characterizing QS signal propagation within a population of bacteria and the number of responsive cooperative…

Information Theory · Computer Science 2020-09-03 Yuting Fang , Adam Noel , Andrew W. Eckford , Nan Yang , Jing Guo

Kinetics of separation between the low and high density phases in a single component Lennard-Jones model has been studied via molecular dynamics simulations, at a very low temperature, in the space dimension $d=2$. For densities close to…

Statistical Mechanics · Physics 2017-04-26 Jiarul Midya , Subir K. Das

The transport properties of colloidal particles in active liquids have been studied extensively. It has led to a deeper understanding of the interactions between passive and active particles. However, the phase behavior of colloidal…

Soft Condensed Matter · Physics 2023-01-30 Pragya Kushwaha , Vivek Semwal , Sayan Maity , Shraddha Mishra , Vijayakumar Chikkadi

We report an experimental approach to control the position of molecular aggregates on surfaces by vacuum deposition. The control is accomplished by regulating the molecular density on the surface in a confined area. The diffusing molecules…

Chemical Physics · Physics 2016-05-13 Hong Wang , Oleg Buller , Wenchong Wang , Andreas Heuer , Dequin Zhang , Harald Fuchs , Lifeng Chi

The ground state of a two-dimensional, harmonically confined mesoscopic assembly of up to thirty polar molecules is studied by computer simulations. As the strength of the confining trap is increased, clusters evolve from superfluid, to…

Mesoscale and Nanoscale Physics · Physics 2013-06-07 Massimo Boninsegni

The open quantum system eigenstate in the vicinity of low-energy decay channel may mimic its features, in particular the characteristic clustering properties of the decay channel. This generic mechanism of clusterization, the so-called…

Nuclear Theory · Physics 2024-11-08 J. P. Linares Fernandez , N. Michel , M. Płoszajczak

Many biological systems form colonies at high density. Passive granular systems will be jammed at such densities, yet for the survival of biological systems it is crucial that they are dynamic. We construct a phase diagram for a system of…

Soft Condensed Matter · Physics 2019-08-13 Daniel R. McCusker , Ruben van Drongelen , Timon Idema

Active matter, comprising many active agents interacting and moving in fluids or more complex environments, is a commonly occurring state of matter in biological and physical systems. By its very nature active matter systems exist in…

Soft Condensed Matter · Physics 2021-02-08 Pierre Gaspard , Raymond Kapral

We perform numerical simulations of a simple model of one-patch colloidal particles to investigate: (i) the behavior of the gas-liquid phase diagram on moving from a spherical attractive potential to a Janus potential and (ii) the…

Soft Condensed Matter · Physics 2017-08-23 Francesco Sciortino , Achille Giacometti , Giorgio Pastore

Quantum many-body systems coupled to out-of-equilibrium reservoirs can behave as active matter and exhibit signs of flocking. However, the resulting steady states are highly mixed and carry only weak quantum signatures. We show that…

Quantum Physics · Physics 2026-03-16 Jacob F. Steiner , Felix von Oppen , Reinhold Egger

We introduce a novel model for active particles with short-range aligning interactions and study their behaviour in crowded environments using numerical simulations. When only active particles are present, we observe a transition from a…

Computational Physics · Physics 2017-12-06 Simon Nilsson , Giovanni Volpe

It has been experimentally shown that Brownian motion and active forward drift controlled by quorum sensing is sufficient to produce clustering behavior in orientable Janus particles. This paper explores the group formation and cohesion of…

Pattern Formation and Solitons · Physics 2025-04-24 Griffin Smith , Nathan Stouffer , Scott G. McCalla , Dominique P. Zosso

Quench dynamics is an active area of study encompassing condensed matter physics and quantum information, with applications to cold-atomic gases and pump-probe spectroscopy of materials. Recent theoretical progress in studying quantum…

Quantum Gases · Physics 2018-05-23 Aditi Mitra

We study the kinetics of two-temperature induced phase separation (2-TIPS) in dilute binary mixtures of active ("hot") and passive ("cold") particles using molecular dynamics simulations and a coarse-grained hydrodynamic model. Following a…

Soft Condensed Matter · Physics 2025-12-23 Nayana Venkatareddy , Partha Sarathi Mondal , Shradha Mishra , Prabal K. Maiti

We investigate a three-dimensional kinetically-constrained model that exhibits two types of phase transitions at different densities. At the jamming density $ \rho_J $ there is a mixed-order phase transition in which a finite fraction of…

Statistical Mechanics · Physics 2017-06-08 Nimrod Segall , Eial Teomy , Yair Shokef

The isothermal compression of a dilute nucleonic gas invoking cluster degrees of freedom is studied in an equilibrium statistical model; this clusterized system is found to be more stable than the pure nucleonic system. The equation of…

Nuclear Theory · Physics 2008-11-26 J. N. De , S. K. Samaddar

We present a numerical simulation of a granular material using hydrodynamic equations. We show that, in the absence of external forces, such a system phase-separates into high density and low density regions. We show that this separation is…

Soft Condensed Matter · Physics 2009-11-07 Scott A. Hill , Gene F. Mazenko

We propose a method based on cluster expansion to study the low activity/high temperature phase of a continuous particle system confined in a finite volume, interacting through a stable and finite range pair potential with negative minimum…

Mathematical Physics · Physics 2021-02-05 Paula M. S. Fialho , Bernardo N. B. de Lima , Aldo Procacci

A recent experiment [Son et al., Soft Matter, 2024, 20,2777-2788] showed that self-propelled particles confined within a circular boundary filled with granular medium spontaneously form a motile cluster that stays on the boundary. This…

Soft Condensed Matter · Physics 2025-06-23 Leonardo Garibaldi Rigon , Yongjoo Baek

We investigate the behaviour of a system of particles with the different character of interaction. The approach makes it possible to describe systems of interacting particles by statistical methods taking into account a spatial…

Condensed Matter · Physics 2007-05-23 Volodymyr Krasnoholovets , Bohdan Lev