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Understanding protein-metal interactions is central to structural biology, with metal ions being vital for catalysis, stability, and signal transduction. Predicting metal-binding residues and metal types remains challenging due to the…

Machine Learning · Computer Science 2026-02-23 Sayedmohammadreza Rastegari , Sina Tabakhi , Xianyuan Liu , Tianyi Jiang , Wei Sang , Haiping Lu

The prediction of phase diagrams in the search for new phases is a complex and computationally intensive task. Density functional theory provides, in many situations, the desired accuracy, but its throughput becomes prohibitively limited as…

Materials Science · Physics 2023-09-19 Michael Minotakis , Hugo Rossignol , Matteo Cobelli , Stefano Sanvito

Quantum neural network (QNN) models have received increasing attention owing to their strong expressibility and resistance to overfitting. It is particularly useful when the size of the training data is small, making it a good fit for…

Quantum Physics · Physics 2023-10-30 Hirotoshi Hirai

We describe the development of artificial neural networks (ANN) for the prediction of the properties of ceramic materials. The ceramics studied here include polycrystalline, inorganic, non-metallic materials and are investigated on the…

Materials Science · Physics 2007-05-23 D. J. Scott , P. V. Coveney , J. A. Kilner , J. C. H. Rossiny , N. Mc N. Alford

Molecular graph neural networks (GNNs) often focus exclusively on XYZ-based geometric representations and thus overlook valuable chemical context available in public databases like PubChem. This work introduces a multimodal framework that…

Machine Learning · Computer Science 2025-05-20 Can Polat , Hasan Kurban , Erchin Serpedin , Mustafa Kurban

Rational design of next-generation functional materials relied on quantitative predictions of their electronic structures beyond single building blocks. First-principles quantum mechanical (QM) modeling became infeasible as the size of a…

Materials Science · Physics 2024-11-05 Siqi Chen , Zhiqiang Wang , Xianqi Deng , Yili Shen , Cheng-Wei Ju , Jun Yi , Lin Xiong , Guo Ling , Dieaa Alhmoud , Hui Guan , Zhou Lin

The process of decision-making in football is characterized by a complex interplay between spatial positioning, opponent pressure, and player intent. This work introduces a Graph Neural Network (GNN) framework designed to predict Receiver…

Machine Learning · Computer Science 2026-05-26 Gabriel Masella , Giuseppe Alessio D'Inverno , Max Goldsmith , Gianluigi Rozza

Message Passing Neural Networks (MPNNs) are a common type of Graph Neural Network (GNN), in which each node's representation is computed recursively by aggregating representations (messages) from its immediate neighbors akin to a…

Machine Learning · Computer Science 2022-04-22 Lingxiao Zhao , Wei Jin , Leman Akoglu , Neil Shah

Graph neural networks (GNNs), as the de-facto model class for representation learning on graphs, are built upon the multi-layer perceptrons (MLP) architecture with additional message passing layers to allow features to flow across nodes.…

Machine Learning · Computer Science 2023-08-07 Chenxiao Yang , Qitian Wu , Jiahua Wang , Junchi Yan

Graph Neural Networks (GNNs) have become a dominant approach to learning graph representations, primarily because of their message-passing mechanisms. However, GNNs typically adopt a fixed aggregator function such as Mean, Max, or Sum…

Machine Learning · Computer Science 2025-07-29 Xuanting Xie , Bingheng Li , Erlin Pan , Zhao Kang , Wenyu Chen

Machine learning (ML) and deep learning (DL) techniques have gained significant attention as reduced order models (ROMs) to computationally expensive structural analysis methods, such as finite element analysis (FEA). Graph neural network…

Machine Learning · Computer Science 2023-09-25 Yuecheng Cai , Jasmin Jelovica

Historically, materials informatics has relied on human-designed descriptors of materials structures. In recent years, graph neural networks (GNNs) have been proposed for learning representations of crystal structures from data end-to-end…

Materials Science · Physics 2023-03-29 Sheng Gong , Tian Xie , Yang Shao-Horn , Rafael Gomez-Bombarelli , Jeffrey C. Grossman

Graph Neural Networks (GNNs) have emerged as a powerful technique for learning on relational data. Owing to the relatively limited number of message passing steps they perform -- and hence a smaller receptive field -- there has been…

Machine Learning · Computer Science 2022-06-27 Ameya Velingker , Ali Kemal Sinop , Ira Ktena , Petar Veličković , Sreenivas Gollapudi

Machine learning (ML) based models have greatly enhanced the traditional materials discovery and design pipeline. Specifically, in recent years, surrogate ML models for material property prediction have demonstrated success in predicting…

Materials Science · Physics 2022-01-21 Prathik R Kaundinya , Kamal Choudhary , Surya R. Kalidindi

Composite materials with different microstructural material symmetries are common in engineering applications where grain structure, alloying and particle/fiber packing are optimized via controlled manufacturing. In fact these…

Materials Science · Physics 2024-04-30 Ravi Patel , Cosmin Safta , Reese E. Jones

Both Transformer and Graph Neural Networks (GNNs) have been employed in the domain of learning to rank (LTR). However, these approaches adhere to two distinct yet complementary problem formulations: ranking score regression based on…

Machine Learning · Computer Science 2024-09-26 Yuchen Li , Haoyi Xiong , Linghe Kong , Zeyi Sun , Hongyang Chen , Shuaiqiang Wang , Dawei Yin

Material representations that are compatible with machine learning models play a key role in developing models that exhibit high accuracy for property prediction. Atomic orbital interactions are one of the important factors that govern the…

Message passing neural networks (MPNNs) are powerful models for node classification but suffer from performance limitations under heterophily (low same-class connectivity) and structural bottlenecks in the graph. We provide a unifying…

Machine Learning · Computer Science 2025-08-26 Jonathan Rubin , Sahil Loomba , Nick S. Jones

The development of machine learning interatomic potentials has immensely contributed to the accuracy of simulations of molecules and crystals. However, creating interatomic potentials for magnetic systems that account for both magnetic…

Computational Physics · Physics 2024-04-30 Hongyu Yu , Yang Zhong , Liangliang Hong , Changsong Xu , Wei Ren , Xingao Gong , Hongjun Xiang

In recent years, there has been growing interest in understanding neural architectures' ability to learn to execute discrete algorithms, a line of work often referred to as neural algorithmic reasoning. The goal is to integrate algorithmic…

Machine Learning · Computer Science 2026-02-16 Solveig Wittig , Antonis Vasileiou , Robert R. Nerem , Timo Stoll , Floris Geerts , Yusu Wang , Christopher Morris
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