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Graph Neural Networks (GNNs) have emerged as formidable resources for processing graph-based information across diverse applications. While the expressive power of GNNs has traditionally been examined in the context of graph-level tasks,…

Machine Learning · Computer Science 2025-03-12 A. Martina Neuman , Rongrong Wang , Yuying Xie

Line intensity mapping (LIM) has the potential to produce highly precise measurements of scale-dependence bias from primordial non-Gaussianity (PNG) due to its ability to map much larger volumes than are available from galaxy surveys. PNG…

Cosmology and Nongalactic Astrophysics · Physics 2022-03-30 Chang Chen , Anthony R. Pullen

Graph neural networks have demonstrated state-of-the-art performance on knowledge graph tasks such as link prediction. However, interpreting GNN predictions remains a challenging open problem. While many GNN explainability methods have been…

Machine Learning · Computer Science 2025-06-17 Ryoji Kubo , Djellel Difallah

Graph-based neural network models are gaining traction in the field of representation learning due to their ability to uncover latent topological relationships between entities that are otherwise challenging to identify. These models have…

Image and Video Processing · Electrical Eng. & Systems 2023-07-25 Aryan Singh , Pepijn Van de Ven , Ciarán Eising , Patrick Denny

Determining the redshift distribution $n(z)$ of galaxy samples is essential for several cosmological probes including weak lensing. For imaging surveys, this is usually done using photometric redshifts estimated on an object-by-object…

Cosmology and Nongalactic Astrophysics · Physics 2017-08-31 Jörg Herbel , Tomasz Kacprzak , Adam Amara , Alexandre Refregier , Claudio Bruderer , Andrina Nicola

Deep neural networks are notoriously miscalibrated, i.e., their outputs do not reflect the true probability of the event we aim to predict. While networks for tabular or image data are usually overconfident, recent works have shown that…

Machine Learning · Computer Science 2024-03-11 Erik Nascimento , Diego Mesquita , Samuel Kaski , Amauri H Souza

Biomarker discovery from high-throughput transcriptomic data is crucial for advancing precision medicine. However, existing methods often neglect gene-gene regulatory relationships and lack stability across datasets, leading to conflation…

Quantitative Methods · Quantitative Biology 2025-11-18 Chaowang Lan , Jingxin Wu , Yulong Yuan , Chuxun Liu , Huangyi Kang , Caihua Liu

Graph Neural Networks (GNNs) are state-of-the-art models for performing prediction tasks on graphs. While existing GNNs have shown great performance on various tasks related to graphs, little attention has been paid to the scenario where…

Machine Learning · Computer Science 2023-08-15 Yu Song , Donglin Wang

This study presents a Graph Neural Networks (GNNs)-based approach for predicting the effective elastic moduli of rocks from their digital CT-scan images. We use the Mapper algorithm to transform 3D digital rock images into graph datasets,…

Machine Learning · Computer Science 2024-01-04 Jaehong Chung , Rasool Ahmad , WaiChing Sun , Wei Cai , Tapan Mukerji

Recent years have witnessed fast developments of graph neural networks (GNNs) that have benefited myriad graph analytic tasks and applications. Most GNNs rely on the homophily assumption that nodes belonging to the same class are more…

Machine Learning · Computer Science 2026-04-21 Xin Zheng , Yi Wang , Yixin Liu , Ming Li , Miao Zhang , Di Jin , Philip S. Yu , Shirui Pan

Graph Neural Networks (GNNs) typically scale with the number of graph edges, making them well suited for sparse graphs but less efficient on dense graphs, such as point clouds or molecular interactions. A common remedy is to sparsify the…

Machine Learning · Computer Science 2025-12-03 Shiyu Chen , Ningyuan Huang , Soledad Villar

We explore how information in images of nearby galaxies can be used to estimate their distance. We train a convolutional Neural Network (NN) to do this, using galaxy images from the Illustris simulation. We show that if the NN is trained on…

Cosmology and Nongalactic Astrophysics · Physics 2022-04-21 Kevin M. Quigley , Samuel Hori , Rupert A. C. Croft

In this work, we seek to improve the velocity reconstruction of clusters by using Graph Neural Networks -- a type of deep neural network designed to analyze sparse, unstructured data. In comparison to the Convolutional Neural Network (CNN)…

Cosmology and Nongalactic Astrophysics · Physics 2024-02-23 Hideki Tanimura , Albert Bonnefous , Jia Liu , Sanmay Ganguly

Recently, Graph Neural Networks (GNNs) have significantly advanced the performance of machine learning tasks on graphs. However, this technological breakthrough makes people wonder: how does a GNN make such decisions, and can we trust its…

Machine Learning · Computer Science 2024-02-26 Xiaoqi Wang , Han-Wei Shen

Aims. We present an innovative artificial neural network (ANN) architecture, called Generative ANN (GANN), that computes the forward model, that is it learns the function that relates the unknown outputs (stellar atmospheric parameters, in…

Instrumentation and Methods for Astrophysics · Physics 2016-10-19 C. Dafonte , D. Fustes , M. Manteiga , D. Garabato , M. A. Alvarez , A. Ulla , C. Allende Prieto

Recommender systems based on graph neural networks perform well in tasks such as rating and ranking. However, in real-world recommendation scenarios, noise such as user misuse and malicious advertisement gradually accumulates through the…

Information Retrieval · Computer Science 2025-05-23 Meng Yan , Cai Xu , Xujing Wang , Ziyu Guan , Wei Zhao , Yuhang Zhou

Graph Neural Networks (GNNs) have emerged as powerful tools for predicting outcomes in graph-structured data. However, a notable limitation of GNNs is their inability to provide robust uncertainty estimates, which undermines their…

Machine Learning · Computer Science 2024-10-10 S. Akansha

Gravitational lensing will cause a dispersion in the Hubble diagram for high redshift sources. This effect will introduce a bias in the cosmological parameter determination using the distance-redshift relation for Type Ia supernovae. In…

Astrophysics · Physics 2009-11-07 R. Amanullah , E. Mortsell , A. Goobar

We propose to study the problem of few shot graph classification in graph neural networks (GNNs) to recognize unseen classes, given limited labeled graph examples. Despite several interesting GNN variants being proposed recently for node…

Machine Learning · Computer Science 2022-05-03 Jatin Chauhan , Deepak Nathani , Manohar Kaul

Infrared and visible image fusion aims to extract complementary features to synthesize a single fused image. Many methods employ convolutional neural networks (CNNs) to extract local features due to its translation invariance and locality.…

Computer Vision and Pattern Recognition · Computer Science 2023-11-02 Jing Li , Lu Bai , Bin Yang , Chang Li , Lingfei Ma , Edwin R. Hancock