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High-throughput structure-based screening of drug-like molecules has become a common tool in biomedical research. Recently, acceleration with graphics processing units (GPUs) has provided a large performance boost for molecular docking…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-07 Mathialakan Thavappiragasam , Wael Elwasif , Ada Sedova

We present a new adaptive parallel algorithm for the challenging problem of multi-dimensional numerical integration on massively parallel architectures. Adaptive algorithms have demonstrated the best performance, but efficient many-core…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-24 Ioannis Sakiotis , Kamesh Arumugam , Marc Paterno , Desh Ranjan , Balša Terzić , Mohammad Zubair

Principal component analysis (PCA) is a key statistical technique for multivariate data analysis. For large data sets the common approach to PCA computation is based on the standard NIPALS-PCA algorithm, which unfortunately suffers from…

Quantitative Methods · Quantitative Biology 2008-11-10 M. Andrecut

Heterogeneous processors with architecturally different cores (CPU and GPU) integrated on the same die lead to new challenges and opportunities for thermal and power management techniques because of shared thermal/power budgets between…

Hardware Architecture · Computer Science 2018-08-30 Kapil Dev , Indrani Paul , Wei Huang , Yasuko Eckert , Wayne Burleson , Sherief Reda

Evolutionary algorithms (EAs) are increasingly implemented on graphics processing units (GPUs) to leverage parallel processing capabilities for enhanced efficiency. However, existing studies largely emphasize the raw speedup obtained by…

Neural and Evolutionary Computing · Computer Science 2026-01-28 Xinmeng Yu , Tao Jiang , Ran Cheng , Yaochu Jin , Kay Chen Tan

As we approach the Exascale era, it is important to verify that the existing frameworks and tools will still work at that scale. Moreover, public Cloud computing has been emerging as a viable solution for both prototyping and urgent…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-23 Igor Sfiligoi , Frank Wuerthwein , Benedikt Riedel , David Schultz

The world of computing is in rapid transition, now dominated by a world of smartphones and cloud services, with profound implications for the future of advanced scientific computing. Simply put, high-performance computing (HPC) is at an…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-08 Daniel Reed , Dennis Gannon , Jack Dongarra

HPC world is dominated by x86 ISA CPUs. This monoculture is not necessarily justified by best performance evaluation, but may inherit from e.g. SW related restrictions on the choice of HW platforms. To avoid running (further) into path…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-04 Oskar Schirmer

At present, the mostly used and developed mechanism is hardware virtualization which provides a common platform to run multiple operating systems and applications in independent partitions. More precisely, it is all about resource…

Hardware Architecture · Computer Science 2009-09-02 Kamanashis Biswas , Md. Ashraful Islam

Graphics Processing Units (GPUs) are now powerful and flexible systems adapted and used for other purposes than graphics calculations (General Purpose computation on GPU -- GPGPU). We present here a prototype to be integrated into…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-06-13 Sylvain Collange , Marc Daumas , David Defour

Modern HPC systems are built with innovative system architectures and novel programming models to further push the speed limit of computing. The increased complexity poses challenges for performance portability and performance evaluation.…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-29 Holger Brunst , Sunita Chandrasekaran , Florina Ciorba , Nick Hagerty , Robert Henschel , Guido Juckeland , Junjie Li , Veronica G. Melesse Vergara , Sandra Wienke , Miguel Zavala

Heterogeneous systems, consisting of CPUs and GPUs, offer the capability to address the demands of compute- and data-intensive applications. However, programming such systems is challenging, requiring knowledge of various parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-08 Suejb Memeti

There is a tremendous amount of interest in AI/ML technologies due to the proliferation of generative AI applications such as ChatGPT. This trend has significantly increased demand on GPUs, which are the workhorses for training AI models.…

Next generation High-Energy Physics (HEP) experiments are presented with significant computational challenges, both in terms of data volume and processing power. Using compute accelerators, such as GPUs, is one of the promising ways to…

This paper is focused on improving multi-GPU performance of a research CFD code on structured grids. MPI and OpenACC directives are used to scale the code up to 16 GPUs. This paper shows that using 16 P100 GPUs and 16 V100 GPUs can be…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-10 Weicheng Xue , Charles W. Jackson , Christoper J. Roy

Modern graphics computing units (GPUs) are designed and optimized to perform highly parallel numerical calculations. This parallelism has enabled (and promises) significant advantages, both in terms of energy performance and calculation. In…

Hardware Architecture · Computer Science 2021-10-26 Quentin Gallouédec

Graphics Processing Units (GPUs) are having a transformational effect on numerical lattice quantum chromodynamics (LQCD) calculations of importance in nuclear and particle physics. The QUDA library provides a package of mixed precision…

High Energy Physics - Lattice · Physics 2010-12-06 Ronald Babich , Michael A. Clark , Bálint Joó

The rapidly growing popularity and scale of data-parallel workloads demand a corresponding increase in raw computational power of GPUs (Graphics Processing Units). As single-GPU systems struggle to satisfy the performance demands, multi-GPU…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-15 Yifan Sun , Trinayan Baruah , Saiful A. Mojumder , Shi Dong , Rafael Ubal , Xiang Gong , Shane Treadway , Yuhui Bao , Vincent Zhao , José L. Abellán , John Kim , Ajay Joshi , David Kaeli

Many artificial intelligence (AI) devices have been developed to accelerate the training and inference of neural networks models. The most common ones are the Graphics Processing Unit (GPU) and Tensor Processing Unit (TPU). They are highly…

Machine Learning · Computer Science 2022-10-25 xiangyang Ju , Yunsong Wang , Daniel Murnane , Nicholas Choma , Steven Farrell , Paolo Calafiura

Reconfigurable computing refers to the use of processors, such as Field Programmable Gate Arrays (FPGAs), that can be modified at the hardware level to take on different processing tasks. A reconfigurable computing platform describes the…

Hardware Architecture · Computer Science 2007-05-23 Darran Nathan , Kelvin Lim Mun Kit , Kelly Choo Hon Min , Philip Wong Jit Chin , Andreas Weisensee
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