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This article investigates and compares three approaches to link prediction in colaboration networks, namely, an ERGM (Exponential Random Graph Model; Robins et al. 2007), a GCN (Graph Convolutional Network; Kipf and Welling 2017), and a…

Applications · Statistics 2024-11-05 Juan Sosa , Diego Martínez , Nicolás Guerrero

The development of graph neural networks (GCN) makes it possible to learn structural features from evolving complex networks. Even though a wide range of realistic networks are directed ones, few existing works investigated the properties…

Social and Information Networks · Computer Science 2020-08-25 Jinsong Li , Jianhua Peng , Shuxin Liu , Lintianran Weng , Cong Li

In today's networked society, many real-world problems can be formalized as predicting links in networks, such as Facebook friendship suggestions, e-commerce recommendations, and the prediction of scientific collaborations in citation…

Social and Information Networks · Computer Science 2021-07-06 Xi Chen , Bo Kang , Jefrey Lijffijt , Tijl De Bie

Network theory has proven invaluable in unraveling complex protein interactions. Previous studies have employed statistical methods rooted in network theory, including the Gaussian graphical model, to infer networks among proteins,…

Methodology · Statistics 2026-05-07 Seungjun Ahn , Eun Jeong Oh

Link prediction plays an important role in network analysis and applications. Recently, approaches for link prediction have evolved from traditional similarity-based algorithms into embedding-based algorithms. However, most existing…

Social and Information Networks · Computer Science 2020-08-11 Lei Wang , Jing Ren , Bo Xu , Jianxin Li , Wei Luo , Feng Xia

Recently, graph-based models designed for downstream tasks have significantly advanced research on graph neural networks (GNNs). GNN baselines based on neural message-passing mechanisms such as GCN and GAT perform worse as the network…

Machine Learning · Computer Science 2023-01-26 Jiayuan Chen , Xiang Zhang , Yinfei Xu , Tianli Zhao , Renjie Xie , Wei Xu

Heterogeneous molecular entities and their interactions, commonly depicted as a network, are crucial for advancing our systems-level understanding of biology. With recent advancements in high-throughput data generation and a significant…

Quantitative Methods · Quantitative Biology 2026-03-18 Kishan KC , Rui Li , Paribesh Regmi , Anne R. Haake

Graph similarity learning refers to calculating the similarity score between two graphs, which is required in many realistic applications, such as visual tracking, graph classification, and collaborative filtering. As most of the existing…

Machine Learning · Computer Science 2022-07-13 Di Jin , Luzhi Wang , Yizhen Zheng , Xiang Li , Fei Jiang , Wei Lin , Shirui Pan

Learning fair graph representations for downstream applications is becoming increasingly important, but existing work has mostly focused on improving fairness at the global level by either modifying the graph structure or objective function…

Social and Information Networks · Computer Science 2022-12-26 April Chen , Ryan Rossi , Nedim Lipka , Jane Hoffswell , Gromit Chan , Shunan Guo , Eunyee Koh , Sungchul Kim , Nesreen K. Ahmed

Link prediction is one of the fundamental problems in computational social science. A particularly common means to predict existence of unobserved links is via structural similarity metrics, such as the number of common neighbors; node…

Social and Information Networks · Computer Science 2019-01-01 Kai Zhou , Tomasz P. Michalak , Talal Rahwan , Marcin Waniek , Yevgeniy Vorobeychik

The emergence of graph neural networks (GNNs) has offered a powerful tool for semi-supervised node classification tasks. Subsequent studies have achieved further improvements through refining the message passing schemes in GNN models or…

Machine Learning · Computer Science 2025-11-26 Songbo Wang , Renchi Yang , Yurui Lai , Xiaoyang Lin , Tsz Nam Chan

In recent years, with the growing number of online social networks, these networks have become one of the best markets for advertising and commerce, so studying these networks is very important. Forecasting new edges in online social…

Social and Information Networks · Computer Science 2020-02-17 Alireza Eshaghpour , Mostafa Salehi , Vahid Ranjbar

Graph neural networks (GNNs) are widely used in the applications based on graph structured data, such as node classification and link prediction. However, GNNs are often used as a black-box tool and rarely get in-depth investigated…

Social and Information Networks · Computer Science 2023-12-27 Haoteng Yin , Yanbang Wang , Pan Li

Graph Convolutional Networks (GCNs) have been proved successful in the field of semi-supervised node classification by extracting structural information from graph data. However, the random selection of labeled nodes used by GCNs may lead…

Machine Learning · Computer Science 2023-01-12 Yao Xiao , Ji Xu , Jing Yang , Shaobo Li

Large Language Models (LLMs) have demonstrated strong capabilities in various natural language processing tasks; however, their application to graph-related problems remains limited, primarily due to scalability constraints and the absence…

Machine Learning · Computer Science 2025-05-08 Hyun Lee , Chris Yi , Maminur Islam , B. D. S. Aritra

In this work, we propose a novel link prediction model and further boost it by studying graph incompleteness. First, we introduce MPNN-then-SF, an innovative architecture leveraging structural feature (SF) to guide MPNN's representation…

Machine Learning · Computer Science 2024-06-05 Xiyuan Wang , Haotong Yang , Muhan Zhang

Predicting properties of nodes in a graph is an important problem with applications in a variety of domains. Graph-based Semi-Supervised Learning (SSL) methods aim to address this problem by labeling a small subset of the nodes as seeds and…

Machine Learning · Computer Science 2019-02-13 Shikhar Vashishth , Prateek Yadav , Manik Bhandari , Partha Talukdar

Link prediction is widely used in a variety of industrial applications, such as merchant recommendation, fraudulent transaction detection, and so on. However, it's a great challenge to train and deploy a link prediction model on…

Social and Information Networks · Computer Science 2020-03-11 Dalong Zhang , Xianzheng Song , Ziqi Liu , Zhiqiang Zhang , Xin Huang , Lin Wang , Jun Zhou

Link prediction infers potential links from observed networks, and is one of the essential problems in network analyses. In contrast to traditional graph representation modeling which only predicts two-way pairwise relations, we propose a…

Social and Information Networks · Computer Science 2021-11-10 Yubai Yuan , Annie Qu

Graph Neural Networks (GNNs) have achieved tremendous success in various real-world applications due to their strong ability in graph representation learning. GNNs explore the graph structure and node features by aggregating and…

Machine Learning · Computer Science 2021-03-09 Wei Jin , Tyler Derr , Yiqi Wang , Yao Ma , Zitao Liu , Jiliang Tang