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Gene expression analysis is a critical method for cancer classification, enabling precise diagnoses through the identification of unique molecular signatures associated with various tumors. Identifying cancer-specific genes from gene…

Quantitative Methods · Quantitative Biology 2024-10-11 Farzana Tabassum , Sabrina Islam , Siana Rizwan , Masrur Sobhan , Tasnim Ahmed , Sabbir Ahmed , Tareque Mohmud Chowdhury

Consider a structured dataset of features, such as $\{\textrm{SEX}, \textrm{INCOME}, \textrm{RACE}, \textrm{EXPERIENCE}\}$. A user may want to know where in the feature space observations are concentrated, and where it is sparse or empty.…

Machine Learning · Computer Science 2021-11-09 Samuel Ackerman , Eitan Farchi , Orna Raz , Marcel Zalmanovici , Maya Zohar

Brain tumor segmentation is a fundamental step in assessing a patient's cancer progression. However, manual segmentation demands significant expert time to identify tumors in 3D multimodal brain MRI scans accurately. This reliance on manual…

Image and Video Processing · Electrical Eng. & Systems 2024-05-07 Fadillah Maani , Anees Ur Rehman Hashmi , Numan Saeed , Mohammad Yaqub

Machine learning algorithms often produce models considered as complex black-box models by both end users and developers. They fail to explain the model in terms of the domain they are designed for. The proposed Iterative Visual Logical…

Machine Learning · Computer Science 2021-07-13 Sridevi Narayana Wagle , Boris Kovalerchuk

Histopathologists establish cancer grade by assessing histological structures, such as glands in prostate cancer. Yet, digital pathology pipelines often rely on grid-based tiling that ignores tissue architecture. This introduces irrelevant…

Automated slice classification is clinically relevant since it can be incorporated into medical image segmentation workflows as a preprocessing step that would flag slices with a higher probability of containing tumors, thereby directing…

Image and Video Processing · Electrical Eng. & Systems 2024-03-13 Shadab Ahamed , Yixi Xu , Ingrid Bloise , Joo H. O , Carlos F. Uribe , Rahul Dodhia , Juan L. Ferres , Arman Rahmim

Segmentation is a crucial task in the medical imaging field and is often an important primary step or even a prerequisite to the analysis of medical volumes. Yet treatments such as surgery complicate the accurate delineation of regions of…

Image and Video Processing · Electrical Eng. & Systems 2024-09-13 Heejong Kim , Leo Milecki , Mina C Moghadam , Fengbei Liu , Minh Nguyen , Eric Qiu , Abhishek Thanki , Mert R Sabuncu

The paper is a short review of medical image segmentation using U-Net and its variants. As we understand going through a medical images is not an easy job for any clinician either radiologist or pathologist. Analysing medical images is the…

Image and Video Processing · Electrical Eng. & Systems 2022-04-20 Vinay Ummadi

Due to low tissue contrast, irregular object appearance, and unpredictable location variation, segmenting the objects from different medical imaging modalities (e.g., CT, MR) is considered as an important yet challenging task. In this…

Computer Vision and Pattern Recognition · Computer Science 2018-05-10 Jinquan Sun , Yinghuan Shi , Yang Gao , Lei Wang , Luping Zhou , Wanqi Yang , Dinggang Shen

Histopathology images contain essential information for medical diagnosis and prognosis of cancerous disease. Segmentation of glands in histopathology images is a primary step for analysis and diagnosis of an unhealthy patient. Due to the…

Image and Video Processing · Electrical Eng. & Systems 2019-09-04 Safiyeh Rezaei , Ali Emami , Hamidreza Zarrabi , Shima Rafiei , Kayvan Najarian , Nader Karimi , Shadrokh Samavi , S. M. Reza Soroushmehr

In the light of the COVID-19 pandemic, deep learning methods have been widely investigated in detecting COVID-19 from chest X-rays. However, a more pragmatic approach to applying AI methods to a medical diagnosis is designing a framework…

Image and Video Processing · Electrical Eng. & Systems 2020-12-01 Sahithya Ravi , Samaneh Khoshrou , Mykola Pechenizkiy

Semantic medical image segmentation using deep learning has recently achieved high accuracy, making it appealing to clinical problems such as radiation therapy. However, the lack of high-quality semantically labelled data remains a…

Image and Video Processing · Electrical Eng. & Systems 2023-03-13 Wei Dai , Siyu Liu , Craig B. Engstrom , Shekhar S. Chandra

Medical images differ from natural images in significantly higher resolutions and smaller regions of interest. Because of these differences, neural network architectures that work well for natural images might not be applicable to medical…

Computer Vision and Pattern Recognition · Computer Science 2020-02-19 Yiqiu Shen , Nan Wu , Jason Phang , Jungkyu Park , Kangning Liu , Sudarshini Tyagi , Laura Heacock , S. Gene Kim , Linda Moy , Kyunghyun Cho , Krzysztof J. Geras

In this paper, we propose ReSeg-CLIP, a new training-free Open-Vocabulary Semantic Segmentation method for remote sensing data. To compensate for the problems of vision language models, such as CLIP in semantic segmentation caused by…

Computer Vision and Pattern Recognition · Computer Science 2026-03-02 Mohammadreza Heidarianbaei , Mareike Dorozynski , Hubert Kanyamahanga , Max Mehltretter , Franz Rottensteiner

With the increase in the use of deep learning for computer-aided diagnosis in medical images, the criticism of the black-box nature of the deep learning models is also on the rise. The medical community needs interpretable models for both…

Image and Video Processing · Electrical Eng. & Systems 2020-12-21 Mookund Sureka , Abhijeet Patil , Deepak Anand , Amit Sethi

Accurate segmentation of surgical instrument tip is an important task for enabling downstream applications in robotic surgery, such as surgical skill assessment, tool-tissue interaction and deformation modeling, as well as surgical…

Computer Vision and Pattern Recognition · Computer Science 2023-09-06 Jiaqi Liu , Yonghao Long , Kai Chen , Cheuk Hei Leung , Zerui Wang , Qi Dou

This work makes a substantial step in the field of split computing, i.e., how to split a deep neural network to host its early part on an embedded device and the rest on a server. So far, potential split locations have been identified…

Computer Vision and Pattern Recognition · Computer Science 2022-12-20 Federico Cunico , Luigi Capogrosso , Francesco Setti , Damiano Carra , Franco Fummi , Marco Cristani

Referring image segmentation aims to segment a referent via a natural linguistic expression.Due to the distinct data properties between text and image, it is challenging for a network to well align text and pixel-level features. Existing…

Computer Vision and Pattern Recognition · Computer Science 2022-03-16 Zhaoqing Wang , Yu Lu , Qiang Li , Xunqiang Tao , Yandong Guo , Mingming Gong , Tongliang Liu

Cell state discovery is crucial for understanding biological systems and enhancing medical outcomes. A key aspect of this process is identifying distinct biomarkers that define specific cell states. However, difficulties arise from the…

Human-Computer Interaction · Computer Science 2025-12-19 Rui Sheng , Zelin Zang , Jiachen Wang , Yan Luo , Zixin Chen , Yan Zhou , Shaolun Ruan , Huamin Qu

In the face of complex decisions, people often engage in a three-stage process that spans from (1) exploring and analyzing pertinent information (intelligence); (2) generating and exploring alternative options (design); and ultimately…

Human-Computer Interaction · Computer Science 2023-12-25 Emre Oral , Ria Chawla , Michel Wijkstra , Narges Mahyar , Evanthia Dimara