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This paper presents BPMN Assistant, a tool that leverages Large Language Models for natural language-based creation and editing of BPMN diagrams. While direct XML generation is common, it is verbose, slow, and prone to syntax errors during…

Branch is a web application that provides users with no programming with the ability to interact directly with large biomedical datasets. The interaction is mediated through a collaborative graphical user interface for building and…

This paper comprises a SysML-based approach to support the model-driven engineering (MDE) of Manufacturing Automation Software Projects (MASP). The Systems Modeling Language (SysML) is adapted to define the SysML-AT (SysML for automation),…

We present a workflow and associated toolkit to automate the creation of graphical user interfaces (GUI) for executables run from command line interfaces (CLI). The workflow consists of three phases, namely (Step 1) the plugin design, (Step…

Context: Model-Based Testing (MBT) was first introduced in 1970's, and has the potential to improve efficiency and effectiveness of testing. However, its adoption-especially for web applications-has been hindered by the effort required to…

Virtual Personal Assistants like Siri have great potential but such developments hit the fundamental problem of how to make computational devices that understand human speech. Natural language understanding is one of the more disappointing…

As data science and machine learning methods are taking on an increasingly important role in the materials research community, there is a need for the development of machine learning software tools that are easy to use (even for nonexperts…

The rapid growth of scientific software has created practical barriers for bioinformatics research. Although powerful statistical, artificial intelligence (AI)-based methods are now widely available, their effective use is often hindered by…

Despite increasing interest in the field of Interpretable Machine Learning (IML), a significant gap persists between the technical objectives targeted by researchers' methods and the high-level goals of consumers' use cases. In this work,…

The web experience in developing regions remains subpar, primarily due to the growing complexity of modern webpages and insufficient optimization by content providers. Users in these regions typically rely on low-end devices and limited…

Liquid Chromatography Mass Spectrometry (LC-MS) is an indispensable analytical technique in proteomics, metabolomics, and other life sciences. While OpenMS provides advanced open-source software for MS data analysis, its complexity can be…

We present IMTLab, an open-source end-to-end interactive machine translation (IMT) system platform that enables researchers to quickly build IMT systems with state-of-the-art models, perform an end-to-end evaluation, and diagnose the…

We present the Python-based Molecule Builder for ESPResSo (pyMBE), an open source software to design custom Coarse-Grained (CG) models, as well as pre-defined models of polyelectrolytes, peptides and globular proteins in the Extensible…

Multimodal Entity Linking (MEL) is the task of mapping mentions with multimodal contexts to the referent entities from a knowledge base. Existing MEL methods mainly focus on designing complex multimodal interaction mechanisms and require…

SBcoyote is an open-source cross-platform biochemical reaction viewer and editor released under the liberal MIT license. It is written in Python and uses wxPython to implement the GUI and the drawing canvas. It supports the visualization…

Machine Learning (ML) models are increasingly used to make critical decisions in real-world applications, yet they have become more complex, making them harder to understand. To this end, researchers have proposed several techniques to…

Multimodal large language models (MLLMs) have made impressive progress in many applications in recent years. However, chemical MLLMs that can handle cross-modal understanding and generation remain underexplored. To fill this gap, we propose…

We introduce TofuML, an interactive system designed to make machine learning (ML) concepts more accessible and engaging for non-expert users. Unlike conventional GUI-based systems, TofuML employs a physical and spatial interface consisting…

Agent-based modeling (ABM) is a well-established paradigm for simulating complex systems via interactions between constituent entities. Machine learning (ML) refers to approaches whereby statistical algorithms 'learn' from data on their…

Semantic web services (SWS) are self-contained, self-describing, semantically marked-up software resources that can be published, discovered, composed and executed across the Web in a semi-automatic way. They are a key component of the…