Related papers: Adjacency-hopping de Bruijn Sequences for Non-repe…
A new numerical characterization of symbolic sequences is proposed. The partition of sequence based on Ke and Tong algorithm is a starting point. Algorithm decomposes original sequence into set of distinct subsequences - a patterns. The set…
In this article, we show how to transform a colored de Bruijn graph (dBG) into a practical index for processing massive sets of sequencing reads. Similar to previous works, we encode an instance of a colored dBG of the set using BOSS and a…
Graph neural networks based on iterative one-hop message passing have been shown to struggle in harnessing the information from distant nodes effectively. Conversely, graph transformers allow each node to attend to all other nodes directly,…
Studying binary perfect codes we show the existence of homogeneous nontransitive codes. Thus, as far as perfect codes are concerned, the propelinear codes are strictly contained in transitive codes, wheresas homogeneous codes form a strict…
A lot of attention has been paid to the investigation of the algebraic properties of linear codes. In most cases, this investigation involves the determination of required code automorphisms, which are useful for decoders, such as the…
We define a new class of shift spaces which contains a number of classes of interest, like Sturmian shifts used in discrete geometry. We show that this class is closed under two natural transformations. The first one is called conjugacy and…
A novel code construction based on spatially coupled low-density parity-check (SC-LDPC) codes is presented. The proposed code ensembles are described by protographs, comprised of several protograph-based chains characterizing individual…
We generalize the notion of cyclic codes by using generator polynomials in (non commutative) skew polynomial rings. Since skew polynomial rings are left and right euclidean, the obtained codes share most properties of cyclic codes. Since…
The decoupled Graph Convolutional Network (GCN), a recent development of GCN that decouples the neighborhood aggregation and feature transformation in each convolutional layer, has shown promising performance for graph representation…
Based on the ideas of Cuntz and Quillen, we give a simple construction of cyclic homology of unital algebras in terms of the noncommutative de Rham complex and a certain differential similar to the equivariant de Rham differential. We…
A new class of folded subspace codes for noncoherent network coding is presented. The codes can correct insertions and deletions beyond the unique decoding radius for any code rate $R\in[0,1]$. An efficient interpolation-based decoding…
The main result here is a characterisation of binary $2$-neighbour-transitive codes with minimum distance at least $5$ via their minimal subcodes, which are found to be generated by certain designs. The motivation for studying this class of…
We introduce the notion of the stopping redundancy hierarchy of a linear block code as a measure of the trade-off between performance and complexity of iterative decoding for the binary erasure channel. We derive lower and upper bounds for…
Given a graph on $n$ vertices and an assignment of colours to the edges, a rainbow Hamilton cycle is a cycle of length $n$ visiting each vertex once and with pairwise different colours on the edges. Similarly (for even $n$) a rainbow…
In this paper we propose a new class of spatially coupled codes based on repeat-accumulate protographs. We show that spatially coupled repeat-accumulate codes have several advantages over spatially coupled low-density parity-check codes…
Given a real dataset and a computation family, we wish to encode and store the dataset in a distributed system so that any computation from the family can be performed by accessing a small number of nodes. In this work, we focus on the…
The well-known approach of Bose, Ray-Chaudhuri and Hocquenghem and its generalization by Hartmann and Tzeng are lower bounds on the minimum distance of simple-root cyclic codes. We generalize these two bounds to the case of repeated-root…
A balanced generalized de Bruijn sequence with parameters $(n,l,k)$ is a cyclic sequence of $n$ bits such that (a) the number of 0's equals the number of 1's, and (b) each substring of length $l$ occurs at most $k$ times. We determine…
Negative orientable sequences, i.e. periodic sequences with elements from a finite alphabet of size at least three in which an n-tuple or the negative of its reverse appears at most once in a period of the sequence, were introduced by…
Generalising the work of Dey, we define the notion of ultra-synchronicity of sequences of real numbers. Let $B_{n,k},C_{n,k},P_{n,k},Q_{n,k}$ be the number of even permutations with $k$ descents, odd permutations with $k$ descents, even…