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This study investigates barely-supervised medical image segmentation where only few labeled data, i.e., single-digit cases are available. We observe the key limitation of the existing state-of-the-art semi-supervised solution cross pseudo…
The need for consistent treatment of uncertainty has recently triggered increased interest in probabilistic deep learning methods. However, most current approaches have severe limitations when it comes to inference, since many of these…
Molecular docking aims to predict the 3D pose of a small molecule in a protein binding site. Traditional docking methods predict ligand poses by minimizing a physics-inspired scoring function. Recently, a diffusion model has been proposed…
We are interested in representation learning from labeled or unlabeled data. Inspired by recent success of self-supervised learning (SSL), we develop a non-contrastive representation learning method that can exploit additional knowledge.…
This thesis studies advanced probabilistic models, including both their theoretical foundations and practical applications, for different semi-supervised learning (SSL) tasks. The proposed probabilistic methods are able to improve the…
Contrastive self-supervised learning (CSL) with a prototypical regularization has been introduced in learning meaningful representations for downstream tasks that require strong semantic information. However, to optimize CSL with a loss…
In the 21st-century information age, with the development of big data technology, effectively extracting valuable information from massive data has become a key issue. Traditional data mining methods are inadequate when faced with…
Pruning aims to reduce the number of parameters while maintaining performance close to the original network. This work proposes a novel \emph{self-distillation} based pruning strategy, whereby the representational similarity between the…
Motivated by machine learning applications in networks of sensors, internet-of-things (IoT) devices, and autonomous agents, we propose techniques for distributed stochastic convex learning from high-rate data streams. The setup involves a…
This paper proposes an information-theoretic representation learning framework, named conditional information flow maximization, to extract noise-invariant sufficient representations for the input data and target task. It promotes the…
Self-supervised learning (SSL) has developed rapidly in recent years. However, most of the mainstream methods are computationally expensive and rely on two (or more) augmentations for each image to construct positive pairs. Moreover, they…
Self-supervised learning can be used for mitigating the greedy needs of Vision Transformer networks for very large fully-annotated datasets. Different classes of self-supervised learning offer representations with either good contextual…
In this paper, we propose a novel self-supervised transfer learning method called \underline{\textbf{D}}istribution \underline{\textbf{M}}atching (DM), which drives the representation distribution toward a predefined reference distribution…
In this paper, we present a new algorithm for semi-supervised representation learning. In this algorithm, we first find a vector representation for the labels of the data points based on their local positions in the space. Then, we map the…
This paper proposes Dynamic Memory Induction Networks (DMIN) for few-shot text classification. The model utilizes dynamic routing to provide more flexibility to memory-based few-shot learning in order to better adapt the support sets, which…
Class imbalance and distributional differences in large datasets present significant challenges for classification tasks machine learning, often leading to biased models and poor predictive performance for minority classes. This work…
The lack of transparency of Deep Neural Networks continues to be a limitation that severely undermines their reliability and usage in high-stakes applications. Promising approaches to overcome such limitations are Prototype-Based…
With the rapid advancement of pathology foundation models (FMs), the representation learning of whole slide images (WSIs) attracts increasing attention. Existing studies develop high-quality patch feature extractors and employ carefully…
In high-dimensional statistics, variable selection recovers the latent sparse patterns from all possible covariate combinations. This paper proposes a novel optimization method to solve the exact L0-regularized regression problem, which is…
We present PROSUB: PROgressive SUBsampling, a deep learning based, automated methodology that subsamples an oversampled data set (e.g. multi-channeled 3D images) with minimal loss of information. We build upon a recent dual-network approach…