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Despite nearly two scores of research on RNA secondary structure and RNA-RNA interaction prediction, the accuracy of the state-of-the-art algorithms are still far from satisfactory. Researchers have proposed increasingly complex energy…

Biomolecules · Quantitative Biology 2013-01-09 Elmirasadat Forouzmand , Hamidreza Chitsaz

We propose the joint graph attention neural network (GAT), clustering with adaptive neighbors (CAN) and probabilistic graphical model for dynamic power flow analysis and fault characteristics. In fact, computational efficiency is the main…

Machine Learning · Computer Science 2025-03-25 Tan Le , Van Le

Carbon fiber and graphene-based nanostructures such as carbon nanotubes (CNTs) and defective structures have extraordinary potential as strong and lightweight materials. A longstanding bottleneck has been lack of understanding and…

Materials Science · Physics 2021-10-26 Qi Zhao , Jordan J. Winetrout , Yanxun Xu , Yusu Wang , Hendrik Heinz

Recent advancements in graph neural networks (GNNs) have significantly enhanced the prediction of material properties by modeling crystal structures as graphs. However, GNNs often struggle to capture global structural characteristics, such…

Machine Learning · Computer Science 2025-08-11 Jaewan Lee , Changyoung Park , Hongjun Yang , Sungbin Lim , Woohyung Lim , Sehui Han

Text has become the predominant form of communication on social media, embedding a wealth of emotional nuances. Consequently, the extraction of emotional information from text is of paramount importance. Despite previous research making…

Computer Vision and Pattern Recognition · Computer Science 2024-08-16 Bingyu Li , Da Zhang , Zhiyuan Zhao , Junyu Gao , Yuan Yuan

While large language models (LLMs) show great potential in temporal reasoning, most existing work focuses heavily on enhancing performance, often neglecting the explainable reasoning processes underlying the results. To address this gap, we…

Computation and Language · Computer Science 2025-05-22 Zihao Jiang , Ben Liu , Miao Peng , Wenjie Xu , Yao Xiao , Zhenyan Shan , Min Peng

In human perception and cognition, a fundamental operation that brains perform is interpretation: constructing coherent neural states from noisy, incomplete, and intrinsically ambiguous evidence. The problem of interpretation is well…

Machine Learning · Computer Science 2019-09-30 Michael Iuzzolino , Yoram Singer , Michael C. Mozer

It is critical that machine learning (ML) model predictions be trustworthy for high-throughput catalyst discovery approaches. Uncertainty quantification (UQ) methods allow estimation of the trustworthiness of an ML model, but these methods…

Machine Learning · Computer Science 2023-02-07 Cameron Gruich , Varun Madhavan , Yixin Wang , Bryan Goldsmith

Machine learning (ML) based materials discovery has emerged as one of the most promising approaches for breakthroughs in materials science. While heuristic knowledge based descriptors have been combined with ML algorithms to achieve good…

Materials Science · Physics 2021-09-28 Sadman Sadeed Omee , Steph-Yves Louis , Nihang Fu , Lai Wei , Sourin Dey , Rongzhi Dong , Qinyang Li , Jianjun Hu

The growing adoption of Graph Neural Networks (GNNs) in high-stakes domains like healthcare and finance demands reliable explanations of their decision-making processes. While inherently interpretable GNN architectures like Graph…

Machine Learning · Computer Science 2025-05-27 Rishabh Bhattacharya , Hari Shankar , Vaishnavi Shivkumar , Ponnurangam Kumaraguru

Large language models (LLMs) such as ChatGPT, Gemini, LlaMa, and Claude are trained on massive quantities of text parsed from the internet and have shown a remarkable ability to respond to complex prompts in a manner often indistinguishable…

Optics · Physics 2025-04-01 Darui Lu , Yang Deng , Jordan M. Malof , Willie J. Padilla

Machine-learning algorithms offer immense possibilities in the development of several cognitive applications. In fact, large scale machine-learning classifiers now represent the state-of-the-art in a wide range of object…

Computer Vision and Pattern Recognition · Computer Science 2016-09-21 Priyadarshini Panda , Swagath Venkataramani , Abhronil Sengupta , Anand Raghunathan , Kaushik Roy

Advertising and feed ranking are essential to many Internet companies such as Facebook. Among many real-world advertising and feed ranking systems, click through rate (CTR) prediction plays a central role. In recent years, many neural…

Machine Learning · Computer Science 2020-07-08 Tongwen Huang , Qingyun She , Zhiqiang Wang , Junlin Zhang

Designing accurate deep learning models for molecular property prediction plays an increasingly essential role in drug and material discovery. Recently, due to the scarcity of labeled molecules, self-supervised learning methods for learning…

Biomolecules · Quantitative Biology 2022-06-08 Han Li , Dan Zhao , Jianyang Zeng

Transforming CO$_2$ into methanol represents a crucial step towards closing the carbon cycle, with thermoreduction technology nearing industrial application. However, obtaining high methanol yields and ensuring the stability of…

Chemical Physics · Physics 2025-07-08 Prajwal Pisal , Ondrej Krejci , Patrick Rinke

Standard transformer-based language models, while powerful for general text, often struggle with the fine-grained syntax and entity relationships in complex technical, engineering documents. To address this, we propose the Contextual Graph…

Computation and Language · Computer Science 2025-08-05 Karan Reddy , Mayukha Pal

Energy-based models for discrete domains, such as graphs, explicitly capture relative likelihoods, naturally enabling composable probabilistic inference tasks like conditional generation or enforcing constraints at test-time. However,…

Initially introduced as a machine translation model, the Transformer architecture has now become the foundation for modern deep learning architecture, with applications in a wide range of fields, from computer vision to natural language…

Computation and Language · Computer Science 2024-06-21 Martin Courtois , Malte Ostendorff , Leonhard Hennig , Georg Rehm

Materials language processing (MLP) is one of the key facilitators of materials science research, as it enables the extraction of structured information from massive materials science literature. Prior works suggested high-performance MLP…

Computation and Language · Computer Science 2023-08-21 Jaewoong Choi , Byungju Lee

Recently, Multi-modal Named Entity Recognition (MNER) has attracted a lot of attention. Most of the work utilizes image information through region-level visual representations obtained from a pretrained object detector and relies on an…

Computation and Language · Computer Science 2022-09-21 Xinyu Wang , Min Gui , Yong Jiang , Zixia Jia , Nguyen Bach , Tao Wang , Zhongqiang Huang , Fei Huang , Kewei Tu
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