English
Related papers

Related papers: Boosting AND/OR-Based Computational Protein Design…

200 papers

Jet clustering or reconstruction is a crucial component at high energy colliders, a procedure to identify sprays of collimated particles originating from the fragmentation and hadronization of quarks and gluons. It is a complicated…

Quantum Physics · Physics 2025-04-03 Hideki Okawa , Xian-Zhe Tao , Qing-Guo Zeng , Man-Hong Yung

Tackling complex optimization problems often relies on expert-designed heuristics, typically crafted through extensive trial and error. Recent advances demonstrate that large language models (LLMs), when integrated into well-designed…

Neural and Evolutionary Computing · Computer Science 2025-05-20 Ziyao Huang , Weiwei Wu , Kui Wu , Jianping Wang , Wei-Bin Lee

Variational wavefunction ans\"{a}tze are at the heart of solving quantum many-body problems in physics and chemistry. Previous designs of hardware-efficient ansatz (HEA) on quantum computers are largely based on heuristics and lack rigorous…

Quantum Physics · Physics 2023-12-22 Xiaoxiao Xiao , Hewang Zhao , Jiajun Ren , Wei-hai Fang , Zhendong Li

Advances in quantum algorithms suggest a tentative scaling advantage on certain combinatorial optimization problems. Recent work, however, has also reinforced the idea that barren plateaus render variational algorithms ineffective on large…

Quantum Physics · Physics 2025-03-14 Tim Bode , Krish Ramesh , Tobias Stollenwerk

Decision trees are one of the most useful and popular methods in the machine learning toolbox. In this paper, we consider the problem of learning optimal decision trees, a combinatorial optimization problem that is challenging to solve at…

Machine Learning · Computer Science 2022-07-01 Rahul Mazumder , Xiang Meng , Haoyue Wang

Recent advances in large language models (LLMs) have popularized test-time scaling, where models generate additional reasoning tokens before producing final answers. These approaches have demonstrated significant performance improvements on…

Artificial Intelligence · Computer Science 2026-01-13 Wenxun Wu , Yuanyang Li , Guhan Chen , Linyue Wang , Hongyang Chen

The use of multivariate classifiers, especially neural networks and decision trees, has become commonplace in particle physics. Typically, a series of classifiers is trained rather than just one to enhance the performance; this is known as…

Nuclear Experiment · Physics 2015-06-16 Justin Stevens , Mike Williams

Bayesian optimal experimental design has immense potential to inform the collection of data so as to subsequently enhance our understanding of a variety of processes. However, a major impediment is the difficulty in evaluating optimal…

Computation · Statistics 2018-03-14 David J. Price , Nigel G. Bean , Joshua V. Ross , Jonathan Tuke

Computational methods are the most effective tools we have besides scientific experiments to explore the properties of complex biological systems. Progress is slowing because digital silicon computers have reached their limits in terms of…

Quantum Physics · Physics 2020-04-03 Viv Kendon

Optimization problems become fundamentally challenging as the number of variables increases. Because the volume of the search space grows exponentially, classical algorithms frequently fail to locate the global minimum of non-convex…

Quantum Physics · Physics 2026-04-23 Dominik Soós , Marc Paterno , John Stenger , Nikos Chrisochoides

Increasing test-time compute for LLMs shows promise across domains but remains underexplored in code generation, despite extensive study in math. In this paper, we propose S*, the first hybrid test-time scaling framework that substantially…

Machine Learning · Computer Science 2025-02-21 Dacheng Li , Shiyi Cao , Chengkun Cao , Xiuyu Li , Shangyin Tan , Kurt Keutzer , Jiarong Xing , Joseph E. Gonzalez , Ion Stoica

In recent years, machine learning has been proposed as a promising strategy to build accurate scoring functions for computational docking finalized to numerically empowered drug discovery. However, the latest studies have suggested that…

Quantitative Methods · Quantitative Biology 2023-02-17 F. Pellicani , D. Dal Ben , A. Perali , S. Pilati

Automated kernel design is critical for overcoming software ecosystem barriers in emerging hardware platforms like RISC-V. While large language models (LLMs) have shown promise for automated kernel optimization, demonstrating success in…

Software Engineering · Computer Science 2025-09-19 Siyuan Chen , Zhichao Lu , Qingfu Zhang

The reconstruction of charged particles will be a key computing challenge for the high-luminosity Large Hadron Collider (HL-LHC) where increased data rates lead to large increases in running time for current pattern recognition algorithms.…

Quantum Physics · Physics 2019-02-25 Frederic Bapst , Wahid Bhimji , Paolo Calafiura , Heather Gray , Wim Lavrijsen , Lucy Linder

Bayesian Optimization (BO) is a widely used approach for blackbox optimization that leverages a Gaussian process (GP) model and an acquisition function to guide future sampling. While effective in low-dimensional settings, BO faces…

Machine Learning · Computer Science 2025-11-26 Pavankumar Koratikere , Leifur Leifsson

For decades, researchers have been applying computer simulation to address problems in biology. However, many of these "grand challenges" in computational biology, such as simulating how proteins fold, remained unsolved due to their great…

Biological Physics · Physics 2009-01-08 Stefan M. Larson , Christopher D. Snow , Michael Shirts , Vijay S. Pande

The calibration and training of a neural network is a complex and time-consuming procedure that requires significant computational resources to achieve satisfactory results. Key obstacles are a large number of hyperparameters to select and…

Machine Learning · Computer Science 2023-09-07 Raffaele Giuseppe Cestari , Gabriele Maroni , Loris Cannelli , Dario Piga , Simone Formentin

Recent studies have suggested that Large Language Models (LLMs) could provide interesting ideas contributing to mathematical discovery. This claim was motivated by reports that LLM-based genetic algorithms produced heuristics offering new…

Artificial Intelligence · Computer Science 2025-11-03 Julien Herrmann , Guillaume Pallez

The success of Large Language Models (LLMs) has established that scaling compute, through joint increases in model capacity and dataset size, is the primary driver of performance in modern machine learning. While machine learning has long…

High Energy Physics - Experiment · Physics 2026-02-18 Matthias Vigl , Nicole Hartman , Michael Kagan , Lukas Heinrich

The study of quantum computation has been motivated by the hope of finding efficient quantum algorithms for solving classically hard problems. In this context, quantum algorithms by local adiabatic evolution have been shown to solve an…

Quantum Physics · Physics 2009-11-10 Jérémie Roland , Nicolas J. Cerf