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We investigate novel random graph embeddings that can be computed in expected polynomial time and that are able to distinguish all non-isomorphic graphs in expectation. Previous graph embeddings have limited expressiveness and either cannot…

Machine Learning · Computer Science 2023-08-25 Pascal Welke , Maximilian Thiessen , Fabian Jogl , Thomas Gärtner

A large body of work has investigated the properties of graph neural networks and identified several limitations, particularly pertaining to their expressive power. Their inability to count certain patterns (e.g., cycles) in a graph lies at…

Machine Learning · Computer Science 2024-06-11 Emily Jin , Michael Bronstein , İsmail İlkan Ceylan , Matthias Lanzinger

An embedding is a mapping from a set of nodes of a network into a real vector space. Embeddings can have various aims like capturing the underlying graph topology and structure, node-to-node relationship, or other relevant information about…

Machine Learning · Computer Science 2023-06-21 Ashkan Dehghan , Kinga Siuta , Agata Skorupka , Andrei Betlen , David Miller , Bogumil Kaminski , Pawel Pralat

Graph representation learning plays an important role in many graph mining applications, but learning embeddings of large-scale graphs remains a problem. Recent works try to improve scalability via graph summarization -- i.e., they learn…

Machine Learning · Computer Science 2022-07-05 Houquan Zhou , Shenghua Liu , Danai Koutra , Huawei Shen , Xueqi Cheng

Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques…

Machine Learning · Computer Science 2018-06-21 Stephen Bonner , Ibad Kureshi , John Brennan , Georgios Theodoropoulos , Andrew Stephen McGough , Boguslaw Obara

While most network embedding techniques model the proximity between nodes in a network, recently there has been significant interest in structural embeddings that are based on node equivalences, a notion rooted in sociology: equivalences or…

Social and Information Networks · Computer Science 2021-01-15 Junchen Jin , Mark Heimann , Di Jin , Danai Koutra

Node embedding is the task of extracting informative and descriptive features over the nodes of a graph. The importance of node embeddings for graph analytics, as well as learning tasks such as node classification, link prediction and…

Machine Learning · Computer Science 2019-06-17 Dimitris Berberidis , Georgios B. Giannakis

With the rising interest in graph representation learning, a variety of approaches have been proposed to effectively capture a graph's properties. While these approaches have improved performance in graph machine learning tasks compared to…

Machine Learning · Computer Science 2019-10-09 Antonia Gogoglou , C. Bayan Bruss , Keegan E. Hines

The recent proliferation of publicly available graph-structured data has sparked an interest in machine learning algorithms for graph data. Since most traditional machine learning algorithms assume data to be tabular, embedding algorithms…

Machine Learning · Computer Science 2019-08-09 Sourav Mukherjee , Tim Oates , Ryan Wright

Embedding graph nodes into a vector space can allow the use of machine learning to e.g. predict node classes, but the study of node embedding algorithms is immature compared to the natural language processing field because of a diverse…

Machine Learning · Computer Science 2018-02-20 Kento Nozawa , Masanari Kimura , Atsunori Kanemura

Nodes residing in different parts of a graph can have similar structural roles within their local network topology. The identification of such roles provides key insight into the organization of networks and can be used for a variety of…

Social and Information Networks · Computer Science 2018-06-21 Claire Donnat , Marinka Zitnik , David Hallac , Jure Leskovec

Graph embedding techniques are pivotal in real-world machine learning tasks that operate on graph-structured data, such as social recommendation and protein structure modeling. Embeddings are mostly performed on the node level for learning…

Machine Learning · Computer Science 2022-04-26 Nan Wang , Lu Lin , Jundong Li , Hongning Wang

Graph Transformers are popular neural networks that extend the well-known Transformer architecture to the graph domain. These architectures operate by applying self-attention on graph nodes and incorporating graph structure through the use…

Machine Learning · Computer Science 2025-02-04 Linus Bao , Emily Jin , Michael Bronstein , İsmail İlkan Ceylan , Matthias Lanzinger

This work provides the first unifying theoretical framework for node (positional) embeddings and structural graph representations, bridging methods like matrix factorization and graph neural networks. Using invariant theory, we show that…

Machine Learning · Computer Science 2020-09-23 Balasubramaniam Srinivasan , Bruno Ribeiro

Representing graphs by their homomorphism counts has led to the beautiful theory of homomorphism indistinguishability in recent years. Moreover, homomorphism counts have promising applications in database theory and machine learning, where…

Data Structures and Algorithms · Computer Science 2023-10-16 Jan Böker , Louis Härtel , Nina Runde , Tim Seppelt , Christoph Standke

Representation learning for graphs enables the application of standard machine learning algorithms and data analysis tools to graph data. Replacing discrete unordered objects such as graph nodes by real-valued vectors is at the heart of…

Machine Learning · Computer Science 2021-02-10 Konstantin Kutzkov

In this paper, we study the graph classification problem from the graph homomorphism perspective. We consider the homomorphisms from $F$ to $G$, where $G$ is a graph of interest (e.g. molecules or social networks) and $F$ belongs to some…

Machine Learning · Computer Science 2020-07-03 Hoang NT , Takanori Maehara

Heterogeneous graphs (HGs) also known as heterogeneous information networks have become ubiquitous in real-world scenarios; therefore, HG embedding, which aims to learn representations in a lower-dimension space while preserving the…

Social and Information Networks · Computer Science 2020-12-02 Xiao Wang , Deyu Bo , Chuan Shi , Shaohua Fan , Yanfang Ye , Philip S. Yu

Lying at the interface between Network Science and Machine Learning, node embedding algorithms take a graph as input and encode its structure onto output vectors that represent nodes in an abstract geometric space, enabling various…

Physics and Society · Physics 2025-10-03 Riccardo Milocco , Fabian Jansen , Diego Garlaschelli

A large driver of the complexity of graph learning is the interplay between structure and features. When analyzing the expressivity of graph neural networks, however, existing approaches ignore features in favor of structure, making it…

Machine Learning · Computer Science 2026-03-04 Martin Carrasco , Olga Zaghen , Kavir Sumaraj , Erik Bekkers , Bastian Rieck
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