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The aggregation or clustering of proteins and other macromolecules plays an important role in the formation of large-scale molecular assemblies within cell membranes. Examples include lipid rafts and postsynaptic domains (PSDs). PSDs are…

Soft Condensed Matter · Physics 2023-12-12 Paul C Bressloff

A physical scenario accounting for the existence of size-limited submicrometric domains in cell membranes is proposed. It is based on the numerical investigation of the counterpart, in lipidic membranes where proteins are diffusing, of the…

Soft Condensed Matter · Physics 2015-06-25 Nicolas Destainville

The formation of dynamical clusters of proteins is ubiquitous in cellular membranes and is in part regulated by the recycling of membrane components. Mean-field models of out-of-equilibrium cluster formation with recycling predict a broad…

Soft Condensed Matter · Physics 2014-02-27 Quentin Vagne , Matthew S. Turner , Pierre Sens

Selected theoretical developments in modeling of deposition of submicrometer size (submicron) particles on solid surfaces, with and without surface diffusion, of interest in colloid, polymer, and certain biological systems, are surveyed. We…

Materials Science · Physics 2008-10-16 Vladimir Privman

We demonstrate particle clustering on macroscopic scales in a coupled nonequilibrium system where two species of particles are advected by a fluctuating landscape and modify the landscape in the process. The phase diagram generated by…

Statistical Mechanics · Physics 2016-05-24 Shauri Chakraborty , Sukla Pal , Sakuntala Chatterjee , Mustansir Barma

We propose a model that leads to the formation of non-equilibrium finite-size domains in a biological membrane. Our model considers the active conformational change of the inclusions and the coupling between inclusion density and membrane…

Soft Condensed Matter · Physics 2007-05-23 Chien-Hsun Chen

Anomalous coarsening in far-from equilibrium one-dimensional systems is investigated by simulation and analytic techniques. The minimal hard core particle (exclusion) models contain mechanisms of aggregated particle diffusion, with rates…

Statistical Mechanics · Physics 2009-11-10 Fabio D. A. Aarao Reis , Robin B. Stinchcombe

We investigate the late coarsening stages of one dimensional adsorption processes with diffusional relaxation. The nonequilibrium domain size distribution is studied by means of the field theory associated to the stochastic evolution. An…

Statistical Mechanics · Physics 2007-05-23 M. D. Grynberg

We present exact and asymptotic results for clusters in the one-dimensional totally asymmetric exclusion process (TASEP) with two different dynamics. The expected length of the largest cluster is shown to diverge logarithmically with…

Statistical Mechanics · Physics 2009-11-07 O. Pulkkinen , J. Merikoski

Motivated by aggregation phenomena in gliding bacteria, we study collective motion in a twodimensional model of active, self-propelled rods interacting through volume exclusion. In simulations with individual particles, we find that…

Soft Condensed Matter · Physics 2009-11-11 F. Peruani , A. Deutsch , M. Baer

We study the formation and growth of equilibrium clusters in a suspension of weakly-charged colloidal particles and small non-adsorbing polymers. The effective potential is characterised by a short-range attraction and a long-range…

Soft Condensed Matter · Physics 2009-11-11 Rodrigo Sanchez , Paul Bartlett

We construct a continuum model for biological aggregations in which individuals experience long-range social attraction and short range dispersal. For the case of one spatial dimension, we study the steady states analytically and…

Populations and Evolution · Quantitative Biology 2007-05-23 Chad M. Topaz , Andrea L. Bertozzi , Mark A. Lewis

We have experimentally investigated field induced aggregation of nonmagnetic particles confined in a magnetic fluid layer when rotating magnetic fields were applied. After application of a magnetic field rotating in the plane of the fluid…

Soft Condensed Matter · Physics 2009-11-13 Jozef Černák , Geir Helgesen

The properties of small clusters can differ dramatically from the bulk phases of the same constituents. In equilibrium, cluster assembly has been recently explored, whereas out of equilibrium, the physical principles of clustering remain…

Soft Condensed Matter · Physics 2019-03-22 Melody X. Lim , Anton Souslov , Vincenzo Vitelli , Heinrich M. Jaeger

Finite mixture models that allow for a broad range of potentially non-elliptical cluster distributions is an emerging methodological field. Such methods allow for the shape of the clusters to match the natural heterogeneity of the data,…

Persistence is considered in diffusion--limited cluster--cluster aggregation, in one dimension and when the diffusion coefficient of a cluster depends on its size $s$ as $D(s) \sim s^\gamma$. The empty and filled site persistences are…

Statistical Mechanics · Physics 2016-08-16 E. K. O. Hellén , M. J. Alava

We study theoretically in the present work the self-assembly of molecules in an open system, which is fed by monomers and depleted in partial or complete clusters. Such a scenario is likely to occur for example in the context of viral…

Biological Physics · Physics 2014-02-18 Martin Castelnovo , Timothée Verdier , Lionel Foret

We study stochastic particle systems on a complete graph and derive effective mean-field rate equations in the limit of diverging system size, which are also known from cluster aggregation models. We establish the propagation of chaos under…

Probability · Mathematics 2021-07-21 Watthanan Jatuviriyapornchai , Stefan Grosskinsky

In this paper, we recall various features of non equilibrium granular systems. Clusters with specific properties are found depending on the packing density, going from loose (a granular gas) to sintered (though brittle) polycrystalline…

Materials Science · Physics 2009-09-29 M. Ausloos , R. Lambiotte , K. Trojan , Z. Koza , M. Pekala

A scaling theory is developed for diffusion-limited cluster aggregation in a porous medium, where the primary particles and clusters stick irreversibly to the walls of the pore space as well as to each other. Three scaling regimes are…

Soft Condensed Matter · Physics 2009-11-13 Patrick B. Warren
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