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We propose a reinforcement-learning algorithm to tackle the challenge of reconstructing phylogenetic trees. The search for the tree that best describes the data is algorithmically challenging, thus all current algorithms for phylogeny…

Populations and Evolution · Quantitative Biology 2023-03-14 Dana Azouri , Oz Granit , Michael Alburquerque , Yishay Mansour , Tal Pupko , Itay Mayrose

In the area of magnetic resonance imaging (MRI), an extensive range of non-linear reconstruction algorithms have been proposed that can be used with general Fourier subsampling patterns. However, the design of these subsampling patterns has…

Image and Video Processing · Electrical Eng. & Systems 2018-05-04 Baran Gözcü , Rabeeh Karimi Mahabadi , Yen-Huan Li , Efe Ilıcak , Tolga Çukur , Jonathan Scarlett , Volkan Cevher

Deep learning holds great promise in the reconstruction of undersampled Magnetic Resonance Imaging (MRI) data, providing new opportunities to escalate the performance of rapid MRI. In existing deep learning-based reconstruction methods,…

Computer Vision and Pattern Recognition · Computer Science 2018-12-11 Fang Liu , Lihua Chen , Richard Kijowski , Li Feng

Deep neural networks achieve state-of-the-art results for accelerated MRI reconstruction. Most research on deep learning based imaging focuses on improving neural network architectures trained and evaluated on fixed and homogeneous training…

Image and Video Processing · Electrical Eng. & Systems 2025-08-20 Kang Lin , Anselm Krainovic , Kun Wang , Reinhard Heckel

In Integrated Sensing And Communication (ISAC) systems, estimating the micro-Doppler (mD) spectrogram of a target requires combining channel estimates retrieved from communication with ad-hoc sensing packets, which cope with the sparsity of…

Signal Processing · Electrical Eng. & Systems 2024-12-05 Federico Mason , Jacopo Pegoraro

The acquisition of Magnetic Resonance Imaging (MRI) is inherently slow. Inspired by recent advances in deep learning, we propose a framework for reconstructing MR images from undersampled data using a deep cascade of convolutional neural…

Computer Vision and Pattern Recognition · Computer Science 2017-03-03 Jo Schlemper , Jose Caballero , Joseph V. Hajnal , Anthony Price , Daniel Rueckert

Purpose: Long scan time in phase encoding for forming complete K-space matrices is a critical drawback of MRI, making patients uncomfortable and wasting important time for diagnosing emergent diseases. This paper aims to reducing the scan…

Computer Vision and Pattern Recognition · Computer Science 2022-03-14 Yiming Liu , Yanwei Pang , Ruiqi Jin , Zhenchang Wang

Magnetic resonance imaging (MRI) is one of the noninvasive imaging modalities that can produce high-quality images. However, the scan procedure is relatively slow, which causes patient discomfort and motion artifacts in images. Accelerating…

Image and Video Processing · Electrical Eng. & Systems 2023-01-18 Samira Vafay Eslahi , Jian Tao , Jim Ji

Deep neural networks give state-of-the-art accuracy for reconstructing images from few and noisy measurements, a problem arising for example in accelerated magnetic resonance imaging (MRI). However, recent works have raised concerns that…

Image and Video Processing · Electrical Eng. & Systems 2021-06-14 Mohammad Zalbagi Darestani , Akshay S. Chaudhari , Reinhard Heckel

We present a method that lowers the dose required for a ptychographic reconstruction by adaptively scanning the specimen, thereby providing the required spatial information redundancy in the regions of highest importance. The proposed…

Computational Physics · Physics 2022-03-30 Marcel Schloz , Johannes Müller , Thomas C. Pekin , Wouter Van den Broek , Christoph T. Koch

Magnetic Resonance Imaging (MRI) represents an important diagnostic modality; however, its inherently slow acquisition process poses challenges in obtaining fully-sampled $k$-space data under motion. In the absence of fully-sampled…

Image and Video Processing · Electrical Eng. & Systems 2024-12-23 George Yiasemis , Nikita Moriakov , Clara I. Sánchez , Jan-Jakob Sonke , Jonas Teuwen

Magnetic resonance imaging has been widely applied in clinical diagnosis, however, is limited by its long data acquisition time. Although imaging can be accelerated by sparse sampling and parallel imaging, achieving promising reconstruction…

Image and Video Processing · Electrical Eng. & Systems 2020-08-26 Tieyuan Lu , Xinlin Zhang , Yihui Huang , Yonggui Yang , Gang Guo , Lijun Bao , Feng Huang , Di Guo , Xiaobo Qu

Quantitative susceptibility mapping (QSM) is an MRI phase-based post-processing method that quantifies tissue magnetic susceptibility distributions. However, QSM acquisitions are relatively slow, even with parallel imaging. Incoherent…

Image and Video Processing · Electrical Eng. & Systems 2021-07-20 Yang Gao , Martijn Cloos , Feng Liu , Stuart Crozier , G. Bruce Pike , Hongfu Sun

Computed Tomography (CT) takes X-ray measurements on the subjects to reconstruct tomographic images. As X-ray is radioactive, it is desirable to control the total amount of dose of X-ray for safety concerns. Therefore, we can only select a…

Medical Physics · Physics 2021-09-15 Ziju Shen , Yufei Wang , Dufan Wu , Xu Yang , Bin Dong

The SPARKLING algorithm was originally developed for accelerated 2D magnetic resonance imaging (MRI) in the compressed sensing (CS) context. It yields non-Cartesian sampling trajectories that jointly fulfill a target sampling density while…

Signal Processing · Electrical Eng. & Systems 2021-06-01 Chaithya G R , Zaccharie Ramzi , Philippe Ciuciu

We propose a model-based deep learning architecture for the reconstruction of highly accelerated diffusion magnetic resonance imaging (MRI) that enables high resolution imaging. The proposed reconstruction jointly recovers all the diffusion…

Image and Video Processing · Electrical Eng. & Systems 2020-01-24 Merry P. Mani , Hemant K. Aggarwal , Sanjay Ghosh , Mathews Jacob

Deep learning approaches to accelerated MRI take a matrix of sampled Fourier-space lines as input and produce a spatial image as output. In this work we show that by careful choice of the offset used in the sampling procedure, the…

Image and Video Processing · Electrical Eng. & Systems 2020-02-05 Aaron Defazio

We investigate a novel approach for image restoration by reinforcement learning. Unlike existing studies that mostly train a single large network for a specialized task, we prepare a toolbox consisting of small-scale convolutional networks…

Computer Vision and Pattern Recognition · Computer Science 2018-04-11 Ke Yu , Chao Dong , Liang Lin , Chen Change Loy

Magnetic resonance imaging (MRI) is an essential medical tool with inherently slow data acquisition process. Slow acquisition process requires patient to be long time exposed to scanning apparatus. In recent years significant efforts are…

Computer Vision and Pattern Recognition · Computer Science 2015-03-05 Jelena Badnjar

Undersampling is a common method in Magnetic Resonance Imaging (MRI) to subsample the number of data points in k-space, reducing acquisition times at the cost of decreased image quality. A popular approach is to employ undersampling…

Image and Video Processing · Electrical Eng. & Systems 2023-08-23 Tobias Weber , Michael Ingrisch , Bernd Bischl , David Rügamer