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To reproduce eScience, several challenges need to be solved: scientific workflows need to be automated; the involved software versions need to be provided in an unambiguous way; input data needs to be easily accessible; High-Performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-30 Kessy Abarenkov , Anne Fouilloux , Helmut Neukirchen , Abdulrahman Azab

Many research fields are currently reckoning with issues of poor levels of reproducibility. Some label it a "crisis", and research employing or building Machine Learning (ML) models is no exception. Issues including lack of transparency,…

Software Engineering · Computer Science 2025-02-27 Harald Semmelrock , Tony Ross-Hellauer , Simone Kopeinik , Dieter Theiler , Armin Haberl , Stefan Thalmann , Dominik Kowald

When automatically generating programming exercise tasks one often also needs to automatically generate programs. At the very least when providing sample solutions is part of automated feedback. But programs can also be used as part of the…

Software Engineering · Computer Science 2025-08-06 Oliver Westphal

Background: Many published machine learning studies are irreproducible. Issues with methodology and not properly accounting for variation introduced by the algorithm themselves or their implementations are attributed as the main…

Machine Learning · Computer Science 2023-04-17 Odd Erik Gundersen , Kevin Coakley , Christine Kirkpatrick , Yolanda Gil

Artifacts such as log data and network traffic are fundamental for cybersecurity research, e.g., in the area of intrusion detection. Yet, most research is based on artifacts that are not available to others or cannot be adapted to own…

Cryptography and Security · Computer Science 2021-11-16 Rafael Uetz , Christian Hemminghaus , Louis Hackländer , Philipp Schlipper , Martin Henze

Nolan and Temple Lang argue that "the ability to express statistical computations is an essential skill." A key related capacity is the ability to conduct and present data analysis in a way that another person can understand and replicate.…

Other Statistics · Statistics 2023-08-29 Ben Baumer , Mine Cetinkaya-Rundel , Andrew Bray , Linda Loi , Nicholas J. Horton

The aim of this article is to introduce a reporting framework for reproducible, interactive research applied to Big Clinical Data, based on open source technologies. The framework is constituted by the following three axes: (i) data, (ii)…

Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

Open-source scientific software is a major driver of scientific progress, yet its development and reuse remain difficult in collaborative settings. Researchers repeatedly face four recurring challenges: discovering and reproducing existing…

Digital Libraries · Computer Science 2026-04-22 Jan Philipp Albrecht , Deborah Schmidt , Lucas Rieckert , Maximilian Otto , Kyle Harrington

Requirements quality research, which is dedicated to assessing and improving the quality of requirements specifications, is dependent on research artifacts like data sets (containing information about quality defects) and implementations…

Software Engineering · Computer Science 2025-01-08 Julian Frattini , Lloyd Montgomery , Davide Fucci , Michael Unterkalmsteiner , Daniel Mendez , Jannik Fischbach

Evidence shows that in a significant number of cases the current methods of research do not allow for reproducible and falsifiable procedures of scientific investigation. As a consequence, the majority of critical decisions at all levels,…

Computational Finance · Quantitative Finance 2018-09-20 Jorge Faleiro

Recent developments in the commercial open source community have catalysed the use of Linux containers for scalable deployment of web-based applications to the cloud. Scientific software can be containerized with dependencies, configuration…

Software Engineering · Computer Science 2015-09-30 Robert Nagler , David Bruhwiler , Paul Moeller , Stephen Webb

Graph-based techniques relying on neural networks and embeddings have gained attention as a way to develop Recommender Systems (RS) with several papers on the topic presented at SIGIR 2022 and 2023. Given the importance of ensuring that…

Information Retrieval · Computer Science 2026-03-30 Maurizio Ferrari Dacrema , Michael Benigni , Nicola Ferro

This paper reconceptualises peer review as structured public commentary. Traditional academic validation is hindered by anonymity, latency, and gatekeeping. We propose a transparent, identity-linked, and reproducible system of scholarly…

Computers and Society · Computer Science 2025-07-01 Craig Steven Wright

Retrieval-Augmented Generation (RAG) is increasingly employed in generative AI-driven scientific workflows to integrate rapidly evolving scientific knowledge bases, yet its reliability is frequently compromised by non-determinism in their…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-24 Baiqiang Wang , Dongfang Zhao , Nathan R Tallent , Luanzheng Guo

The reproducibility of scientific findings are an important hallmark of quality and integrity in research. The scientific method requires hypotheses to be subjected to the most crucial tests, and for the results to be consistent across…

Computers and Society · Computer Science 2019-09-11 Dustin Tanksley , Donald C. Wunsch

Replicability is absent in games research; a lack of transparency in protocol detail hinders scientific consensus and willingness to publish public datasets, impacting the application of these techniques in video games research. To combat…

Human-Computer Interaction · Computer Science 2023-04-07 Emma J. Pretty , Renan Guarese , Haytham M. Fayek , Fabio Zambetta

The authors have uploaded their artifact to Zenodo, which ensures a long-term retention of the artifact. The artifact allows to re-run the experiments very smoothly, and the dependencies are well documented. The process to regenerate data…

Software Engineering · Computer Science 2021-04-21 Alessandro Pellegrini

Science reproducibility is a cornerstone feature in scientific workflows. In most cases, this has been implemented as a way to exactly reproduce the computational steps taken to reach the final results. While these steps are often…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-21 Karan Vahi , Mats Rynge , George Papadimitriou , Duncan A. Brown , Rajiv Mayani , Rafael Ferreira da Silva , Ewa Deelman , Anirban Mandal , Eric Lyons , Michael Zink

Scientific knowledge increasingly depends on complex computational processes where both hardware and software layers can influence research outcomes. As computational complexity grows, classical-quantum integration provides a lens for…

Emerging Technologies · Computer Science 2026-03-06 Anna Vrtiak , Duuk Baten , Ariana Torres-Knoop