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Biomedical Question Answering aims to obtain an answer to the given question from the biomedical domain. Due to its high requirement of biomedical domain knowledge, it is difficult for the model to learn domain knowledge from limited…

Computation and Language · Computer Science 2022-06-29 Yuxuan Lu , Jingya Yan , Zhixuan Qi , Zhongzheng Ge , Yongping Du

Generalized Entity Matching (GEM), which aims at judging whether two records represented in different formats refer to the same real-world entity, is an essential task in data management. The prompt tuning paradigm for pre-trained language…

Computation and Language · Computer Science 2024-05-09 Yikuan Xia , Jiazun Chen , Xinchi Li , Jun Gao

Entity Matching (EM), which aims to identify whether two entity records from two relational tables refer to the same real-world entity, is one of the fundamental problems in data management. Traditional EM assumes that two tables are…

Databases · Computer Science 2022-07-19 Pengfei Wang , Xiaocan Zeng , Lu Chen , Fan Ye , Yuren Mao , Junhao Zhu , Yunjun Gao

Biomedical entity linking (BEL) is the task of grounding entity mentions to a knowledge base (KB). A popular approach to the task are name-based methods, i.e. those identifying the most appropriate name in the KB for a given mention, either…

Computation and Language · Computer Science 2024-01-11 Samuele Garda , Ulf Leser

Chinese named entity recognition (CNER) is an important task in Chinese natural language processing field. However, CNER is very challenging since Chinese entity names are highly context-dependent. In addition, Chinese texts lack delimiters…

Computation and Language · Computer Science 2019-05-07 Fangzhao Wu , Junxin Liu , Chuhan Wu , Yongfeng Huang , Xing Xie

Domain-specific Named Entity Recognition (NER), whose goal is to recognize domain-specific entities and their categories, provides an important support for constructing domain knowledge graphs. Currently, deep learning-based methods are…

Computation and Language · Computer Science 2024-09-17 Le Xiao , Yunfei Xu , Jing Zhao

We propose Medical Entity Definition-based Sentence Embedding (MED-SE), a novel unsupervised contrastive learning framework designed for clinical texts, which exploits the definitions of medical entities. To this end, we conduct an…

Machine Learning · Computer Science 2022-12-12 Hyeonbin Hwang , Haanju Yoo , Yera Choi

Linking biomedical entities is an essential aspect in biomedical natural language processing tasks, such as text mining and question answering. However, a difficulty of linking the biomedical entities using current large language models…

Computation and Language · Computer Science 2023-08-29 Xi Yan , Cedric Möller , Ricardo Usbeck

This study harnesses state-of-the-art AI technology for detecting mental disorders through user-generated textual content. Existing studies typically rely on fully supervised machine learning, which presents challenges such as the…

Computation and Language · Computer Science 2025-03-17 Haoxin Liu , Wenli Zhang , Jiaheng Xie , Buomsoo Kim , Zhu Zhang , Yidong Chai , Sudha Ram

Entity linking (EL), the task of disambiguating mentions in text by linking them to entities in a knowledge graph, is crucial for text understanding, question answering or conversational systems. Entity linking on short text (e.g., single…

Computation and Language · Computer Science 2021-06-21 Hang Jiang , Sairam Gurajada , Qiuhao Lu , Sumit Neelam , Lucian Popa , Prithviraj Sen , Yunyao Li , Alexander Gray

To accelerate learning process with few samples, meta-learning resorts to prior knowledge from previous tasks. However, the inconsistent task distribution and heterogeneity is hard to be handled through a global sharing model…

Machine Learning · Computer Science 2022-06-22 Geng Li , Boyuan Ren , Hongzhi Wang

Soft prompts have been recently proposed as a tool for adapting large frozen language models (LMs) to new tasks. In this work, we repurpose soft prompts to the task of injecting world knowledge into LMs. We introduce a method to train soft…

Computation and Language · Computer Science 2022-10-11 Cicero Nogueira dos Santos , Zhe Dong , Daniel Cer , John Nham , Siamak Shakeri , Jianmo Ni , Yun-hsuan Sung

By integrating domain knowledge with labeled samples, informed machine learning has been emerging to improve the learning performance for a wide range of applications. Nonetheless, rigorous understanding of the role of injected domain…

Machine Learning · Computer Science 2022-07-05 Jianyi Yang , Shaolei Ren

While large language models (LLMs) are pretrained on massive amounts of data, their knowledge coverage remains incomplete in specialized, data-scarce domains, motivating extensive efforts to study synthetic data generation for knowledge…

Machine Learning · Computer Science 2026-03-24 Kexian Tang , Jiani Wang , Shaowen Wang , Kaifeng Lyu

Named entity disambiguation (NED), which involves mapping textual mentions to structured entities, is particularly challenging in the medical domain due to the presence of rare entities. Existing approaches are limited by the presence of…

Computation and Language · Computer Science 2021-10-18 Maya Varma , Laurel Orr , Sen Wu , Megan Leszczynski , Xiao Ling , Christopher Ré

Latent space models are widely used for analyzing high-dimensional discrete data matrices, such as patient-feature matrices in electronic health records (EHRs), by capturing complex dependence structures through low-dimensional embeddings.…

Machine Learning · Computer Science 2026-02-19 Weijing Tang , Ming Yuan , Zongqi Xia , Tianxi Cai

Modern language models have the capacity to store and use immense amounts of knowledge about real-world entities, but it remains unclear how to update such knowledge stored in model parameters. While prior methods for updating knowledge in…

Computation and Language · Computer Science 2023-11-01 Shankar Padmanabhan , Yasumasa Onoe , Michael J. Q. Zhang , Greg Durrett , Eunsol Choi

Progress in biomedical Named Entity Recognition (NER) and Entity Linking (EL) is currently hindered by a fragmented data landscape, a lack of resources for building explainable models, and the limitations of semantically-blind evaluation…

Computation and Language · Computer Science 2025-11-17 Nishant Mishra , Wilker Aziz , Iacer Calixto

Biomedical Named Entity Recognition presents significant challenges due to the complexity of biomedical terminology and inconsistencies in annotation across datasets. This paper introduces SRU-NER (Slot-based Recurrent Unit NER), a novel…

Computation and Language · Computer Science 2025-07-25 João Ruano , Gonçalo M. Correia , Leonor Barreiros , Afonso Mendes

Medicine is an empirical discipline refined through long-term observation and the messy, high-variance reality of clinical practice. Physicians build diagnostic and therapeutic competence through repeated cycles of application, reflection,…

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