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In the real world, a molecule is a 3D geometric structure. Compared to 1D SMILES sequences and 2D molecular graphs, 3D molecules represent the most informative molecular modality. Despite the rapid progress of autoregressive-based language…

Computational Engineering, Finance, and Science · Computer Science 2025-08-15 Lei Jiang , Shuzhou Sun , Biqing Qi , Yuchen Fu , Xiaohua Xu , Yuqiang Li , Dongzhan Zhou , Tianfan Fu

Molecular conformation optimization is crucial to computer-aided drug discovery and materials design. Traditional energy minimization techniques rely on iterative optimization methods that use molecular forces calculated by a physical…

Machine learning (ML) is now commonplace, powering data-driven applications in various organizations. Unlike the traditional perception of ML in research, ML production pipelines are complex, with many interlocking analytical components…

Databases · Computer Science 2021-03-31 Doris Xin , Hui Miao , Aditya Parameswaran , Neoklis Polyzotis

In recent years the machine learning techniques have shown a great potential in various problems from a multitude of disciplines, including materials design and drug discovery. The high computational speed on the one hand and the accuracy…

Chemical Physics · Physics 2018-05-09 Konstantin Gubaev , Evgeny V. Podryabinkin , Alexander V. Shapeev

Efficient distillation is a key pathway for converting expensive reasoning capability into deployable efficiency, yet in the frontier regime where the student already has strong reasoning ability, naive continual distillation often yields…

Computation and Language · Computer Science 2026-05-22 Zhanming Shen , Jiaqi Hu , Zeyu Qin , Hao Chen , Wentao Ye , Zenan Huang , Yihong Zhuang , Guoshan Lu , Junlin Zhou , Junbo Zhao

Learning and Artificial Intelligence (ML/AI) techniques have become increasingly prevalent in high performance computing (HPC). However, these methods depend on vast volumes of floating point data for training and validation which need…

Machine Learning · Computer Science 2024-03-26 Robert Underwood , Jon C. Calhoun , Sheng Di , Franck Cappello

The quality, consistency, and information content of training data is often what determines the practical value of machine-learning models for atomistic simulations. Yet, many widely used electronic-structure databases are assembled having…

Curriculum learning-organizing training data from easy to hard-has improved efficiency across machine learning domains, yet remains underexplored for language model pretraining. We present the first systematic investigation of curriculum…

Computation and Language · Computer Science 2026-01-29 Yang Zhang , Amr Mohamed , Hadi Abdine , Guokan Shang , Michalis Vazirgiannis

We focus on bridging domain discrepancy in lane detection among different scenarios to greatly reduce extra annotation and re-training costs for autonomous driving. Critical factors hinder the performance improvement of cross-domain lane…

Computer Vision and Pattern Recognition · Computer Science 2022-11-10 Chenguang Li , Boheng Zhang , Jia Shi , Guangliang Cheng

Multi-task learning (MTL) can advance assistive driving by exploring inter-task correlations through shared representations. However, existing methods face two critical limitations: single-modality constraints limiting comprehensive scene…

Computer Vision and Pattern Recognition · Computer Science 2025-06-24 Wenzhuo Liu , Yicheng Qiao , Zhen Wang , Qiannan Guo , Zilong Chen , Meihua Zhou , Xinran Li , Letian Wang , Zhiwei Li , Huaping Liu , Wenshuo Wang

The development of accurate and transferable machine learning (ML) potentials for predicting molecular energetics is a challenging task. The process of data generation to train such ML potentials is a task neither well understood nor…

Computational Physics · Physics 2018-05-25 Justin S. Smith , Ben Nebgen , Nicholas Lubbers , Olexandr Isayev , Adrian E. Roitberg

Chemical kinetic models are an essential component in the development and optimisation of combustion devices through their coupling to multi-dimensional simulations such as computational fluid dynamics (CFD). Low-dimensional kinetic models…

Chemical Physics · Physics 2023-06-21 Mark Kelly , Mark Fortune , Gilles Bourque , Stephen Dooley

Molecular dynamics (MD) simulates the time evolution of atomic systems governed by interatomic forces, and the fidelity of these simulations depends critically on the underlying force model. Classical force fields (CFFs) rely on fixed…

Performance · Computer Science 2026-03-05 Udari De Alwis , Benjamin E. Mayer , Tom J. Ashby , Maria Barrera , Timon Evenblij , Joyjit Kundu

The rapid advancement of code large language models (LLMs) has sparked significant research interest in systematically evaluating their code generation capabilities, yet existing benchmarks predominantly assess models at a single structural…

Computation and Language · Computer Science 2025-12-30 Fanglin Xu , Wei Zhang , Jian Yang , Guo Chen , Aishan Liu , Zhoujun Li , Xianglong Liu , Bryan Dai

Machine-learned potentials (MLPs) trained on ab initio data combine the computational efficiency of classical interatomic potentials with the accuracy and generality of the first-principles method used in the creation of the respective…

Chemical Physics · Physics 2024-08-07 Leonid Kahle , Benoit Minisini , Tai Bui , Jeremy T. First , Corneliu Buda , Thomas Goldman , Erich Wimmer

Multi-principal element alloys (MPEAs) exhibit exceptional properties but face significant challenges in developing accurate machine-learning potentials (MLPs) due to their vast compositional and configurational complexity. Here, we…

Materials Science · Physics 2025-10-21 Yan Liu , Jiantao Wang , Hongkun Deng , Yan Sun , Xing-Qiu Chen , Peitao Liu

Training with huge datasets and a large number of participating devices leads to bottlenecks in federated learning (FL). Furthermore, the challenges of heterogeneity between multiple FL clients affect the overall performance of the system.…

Machine Learning · Computer Science 2025-06-06 Dev Gurung , Shiva Raj Pokhrel

Pre-training & fine-tuning is a prevalent paradigm in computer vision (CV). Recently, parameter-efficient transfer learning (PETL) methods have shown promising performance in adapting to downstream tasks with only a few trainable…

Computer Vision and Pattern Recognition · Computer Science 2023-11-29 Dongshuo Yin , Xueting Han , Bin Li , Hao Feng , Jing Bai

Recent advances in multi-modal pre-training methods have shown promising effectiveness in learning 3D representations by aligning multi-modal features between 3D shapes and their corresponding 2D counterparts. However, existing multi-modal…

Computer Vision and Pattern Recognition · Computer Science 2025-07-24 Liwen Liu , Weidong Yang , Lipeng Ma , Ben Fei

Accurate survival prediction in Non-Small Cell Lung Cancer (NSCLC) requires integrating clinical, radiological, and histopathological data. Multimodal Deep Learning (MDL) can improve precision prognosis, but small cohorts and missing…