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We consider relations between the size, treewidth, and local crossing number (maximum number of crossings per edge) of graphs embedded on topological surfaces. We show that an $n$-vertex graph embedded on a surface of genus $g$ with at most…
Tree representations of (sets of) symmetric binary relations, or equivalently edge-colored undirected graphs, are of central interest, e.g.\ in phylogenomics. In this context symbolic ultrametrics play a crucial role. Symbolic ultrametrics…
We give a fixed-parameter tractable algorithm that, given a parameter $k$ and two graphs $G_1,G_2$, either concludes that one of these graphs has treewidth at least $k$, or determines whether $G_1$ and $G_2$ are isomorphic. The running time…
The induced arboricity of a graph $G$ is the smallest number of induced forests covering the edges of $G$. This is a well-defined parameter bounded from above by the number of edges of $G$ when each forest in a cover consists of exactly one…
We propose polynomial-time algorithms that sparsify planar and bounded-genus graphs while preserving optimal or near-optimal solutions to Steiner problems. Our main contribution is a polynomial-time algorithm that, given an unweighted graph…
Let $G$ be a connected graph of order $n$. A spanning $k$-tree of $G$ is a spanning tree with the maximum degree at most $k$, and a spanning $k$-ended-tree of $G$ is a spanning tree at most $k$ leaves, where $k\geq2$ is an integer. This…
In the $k$-cut problem, we are given an edge-weighted graph and want to find the least-weight set of edges whose deletion breaks the graph into $k$ connected components. Algorithms due to Karger-Stein and Thorup showed how to find such a…
A connected graph has a $(k,\ell)$-cover if each of its edges is contained in at least $\ell$ cliques of order $k$. Motivated by recent advances in extremal combinatorics and the literature on edge modification problems, we study the…
We define the (random) $k$-cut number of a rooted graph to model the difficulty of the destruction of a resilient network. The process is as the cut model of Meir and Moon except now a node must be cut $k$ times before it is destroyed. The…
The AHU-algorithm solves the computationally difficult graph isomorphism problem for rooted trees, and does so with a linear time complexity. Although the AHU-algorithm has remained state of the art for almost 50 years, it has been…
The perfect phylogeny problem is a classic problem in computational biology, where we seek an unrooted phylogeny that is compatible with a set of qualitative characters. Such a tree exists precisely when an intersection graph associated…
Graph partitioning problems are a central topic of study in algorithms and complexity theory. Edge expansion and vertex expansion, two popular graph partitioning objectives, seek a $2$-partition of the vertex set of the graph that minimizes…
A star edge coloring of a graph $G$ is a proper edge coloring of $G$ such that every path and cycle of length four in $G$ uses at least three different colors. The star chromatic index of a graph $G$, is the smallest integer $k$ for which…
Characterization of joint probability distribution for large networks of random variables remains a challenging task in data science. Probabilistic graph approximation with simple topologies has practically been resorted to; typically the…
In the analysis of large-scale network data, a fundamental operation is the comparison of observed phenomena to the predictions provided by null models: when we find an interesting structure in a family of real networks, it is important to…
A popular model to measure the stability of a network is k-core - the maximal induced subgraph in which every vertex has at least k neighbors. Many studies maximize the number of vertices in k-core to improve the stability of a network. In…
The k-core of a graph is its maximal subgraph with minimum degree at least k, and the core value of a vertex u is the largest k for which u is contained in the k-core of the graph. Among cohesive subgraphs, k-core and its variants have…
We study the problem of enumerating the $k$-arc-connected orientations of a graph $G$, i.e., generating each exactly once. A first algorithm using submodular flow optimization is easy to state, but intricate to implement. In a second…
A vertex of degree one is called an end-vertex, and an end-vertex of a tree is called a leaf. A tree with at most $k$ leaves is called a $k$-ended tree. For a positive integer $k$, let $t_k$ be the order of a largest $k$-ended tree. Let…
Given a directed graph $G=(V,A)$, the Directed Maximum Leaf Spanning Tree problem asks to compute a directed spanning tree (i.e., an out-branching) with as many leaves as possible. By designing a Branch-and-Reduced algorithm combined with…