English
Related papers

Related papers: In distributive phosphorylation catalytic constant…

200 papers

Multisite phosphorylation is a signaling mechanism well known to give rise to multiple steady states, a property termed multistationarity. When phosphorylation occurs in a sequential and distributive manner, we obtain a family of networks…

Molecular Networks · Quantitative Biology 2023-03-07 Elisenda Feliu , Nidhi Kaihnsa , Timo de Wolff , Oğuzhan Yürük

Adaptive dynamical networks appear in various real-word systems. One of the simplest phenomenological models for investigating basic properties of adaptive networks is the system of coupled phase oscillators with adaptive couplings. In this…

Adaptation and Self-Organizing Systems · Physics 2019-11-11 Rico Berner , Jan Fialkowski , Dmitry Kasatkin , Vladimir Nekorkin , Serhiy Yanchuk , Eckehard Schöll

Oscillatory systems with time-delayed pulsatile feedback appear in various applied and theoretical research areas, and received a growing interest in the last years. For such systems, we report a remarkable scenario of destabilization of a…

Chaotic Dynamics · Physics 2015-05-28 Vladimir Klinshov , Leonhard Lücken , Dmitry Shchapin , Vladimir Nekorkin , Serhiy Yanchuk

Periodic forcing of an oscillatory system produces frequency locking bands within which the system frequency is rationally related to the forcing frequency. We study extended oscillatory systems that respond to uniform periodic forcing at…

patt-sol · Physics 2009-10-31 Christian Elphick , Aric Hagberg , Ehud Meron

This article studies stochastic relative phase stability, i.e., stochastic phase-cohesiveness, of discrete-time phase-coupled oscillators. Stochastic phase-cohesiveness in two types of networks is studied. First, we consider oscillators…

Systems and Control · Electrical Eng. & Systems 2023-08-10 Matin Jafarian , Mohammad H. Mamduhi , Karl H. Johansson

Parametrized polynomial ordinary differential equation systems are broadly used for modeling, specially in the study of biochemical reaction networks under the assumption of mass-action kinetics. Understanding the qualitative behavior of…

Molecular Networks · Quantitative Biology 2018-10-15 Elisenda Feliu

A ferrofluid droplet confined in a Hele-Shaw cell can be deformed into a stably spinning ``gear,'' using crossed magnetic fields. Previously, fully nonlinear simulation revealed that the spinning gear emerges as a stable traveling wave…

Pattern Formation and Solitons · Physics 2023-05-19 Zongxin Yu , Ivan C. Christov

When a driven oscillator loses phase-locking to a master oscillator via a Hopf bifurcation, it enters a bounded-phase regime in which its average frequency is still equal to the master frequency, but its phase displays temporal…

Optics · Physics 2014-04-24 Marco Romanelli , Lihua Wang , Marc Brunel , Marc Vallet

We analyzed conditions for Hopf and Turing instabilities to occur in two-component fractional reaction-diffusion systems. We showed that the eigenvalue spectrum and fractional derivative order mainly determine the type of instability and…

Adaptation and Self-Organizing Systems · Physics 2009-12-09 B. Y. Datsko , V. V. Gafiychuk

Astounding properties of biological sensors can often be mapped onto a dynamical system in the vicinity a bifurcation. For mammalian hearing, a Hopf bifurcation description has been shown to work across a whole range of scales, from…

Neurons and Cognition · Quantitative Biology 2015-10-13 Florian Gomez , Tom Lorimer , Ruedi Stoop

A metapopulations network is a multi-patch habitat system, where populations live and interact in the habitat patches, and individuals disperse from one patch to the other via dispersal connections. The loss of dispersal connections among…

Dynamical Systems · Mathematics 2019-09-13 Dinesh Kumar , Soumyendu Raha

A model for the study of the effective quasistatic conductivity and permittivity of dispersed systems with particle-host interphase, within which many-particle polarization and correlation contributions are effectively incorporated, is…

Soft Condensed Matter · Physics 2016-08-10 M. Ya. Sushko , A. K. Semenov

Many biological systems, such as metabolic pathways, exhibit bistability behavior: these biological systems exhibit two distinct stable states with switching between the two stable states controlled by certain conditions. Since…

Quantitative Methods · Quantitative Biology 2013-07-04 Yi Ming Zou

We introduce and analyse the kinetic random-field nonreciprocal Ising model, which incorporates bimodal (double-delta) diffusive disorder along with pairwise nonreciprocal interactions between two different species. Using mean-field and…

Statistical Mechanics · Physics 2026-03-09 Arjun R , A. V. Anil Kumar

In this paper, we derive the algorithm for calculating the normal form of the double Hopf bifurcation that appears in a memory-based diffusion system via taking memory-based diffusion coefficient and the memory delay as the perturbation…

Dynamical Systems · Mathematics 2022-02-10 Yongli Song , Yahong Peng , Tonghua Zhang

We study the relationship between the modularity of scale-free excitable networks and their ability to support self-sustained oscillation patterns. We find that the probability for a network of given degree-distribution exponent to be able…

Physics and Society · Physics 2018-11-19 Jason Danison , Miguel Perez

Multipotent stem or progenitor cells undergo a sequential series of binary fate decisions, which ultimately generate the diversity of differentiated cells. Efforts to understand cell fate control have focused on simple gene regulatory…

Molecular Networks · Quantitative Biology 2009-09-15 David V. Foster , Jacob G. Foster , Sui Huang , Stuart A. Kauffman

Cell-fate transition can be modeled by ordinary differential equations (ODEs) which describe the behavior of several molecules in interaction, and for which each stable equilibrium corresponds to a possible phenotype (or 'biological…

Dynamical Systems · Mathematics 2021-04-12 Nastassia Pouradier Duteil , Jules Guilberteau , Camille Pouchol , Nastassia Duteil

We study parametric resonance of interacting waves having the same wave vector and frequency. In addition to the well-known period-doubling instability we show that under certain conditions the instability is caused by a Hopf bifurcation…

patt-sol · Physics 2009-10-30 Franz-Josef Elmer

We disclose the generality of the intrinsic mechanisms underlying multistability in reciprocally inhibitory 3-cell circuits composed of simplified, low-dimensional models of oscillatory neurons, as opposed to those of a detailed Hodgkin-…

Adaptation and Self-Organizing Systems · Physics 2020-08-26 J. Collens , K. Pusuluri , A. Kelly , D. Knapper , T. Xing , S. Basodi , D. Alacam , A. L. Shilnikov