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One of the most powerful techniques to study protein structures is to look for recurrent fragments (also called substructures or spatial motifs), then use them as patterns to characterize the proteins under study. An emergent trend consists…

Computational Engineering, Finance, and Science · Computer Science 2018-03-02 Wajdi Dhifli , Rabie Saidi , Engelbert Mephu Nguifo

We present an informal survey (meant to accompany another paper) on graph compression methods. We focus on lossless methods, briefly list available pproaches, and compare them where possible or give some indicators on their compression…

Data Structures and Algorithms · Computer Science 2015-04-03 Sebastian Maneth , Fabian Peternek

In this paper, we determine which non-random sampling of fixed size gives the best linear predictor of the sum of a finite spatial population. We employ different multiscale superpopulation models and use the minimum mean-squared error as…

Statistics Theory · Mathematics 2007-06-13 Vinay J. Ribeiro , Rudolf H. Riedi , Richard G. Baraniuk

In large scale collective decision making, social choice is a normative study of how one ought to design a protocol for reaching consensus. However, in instances where the underlying decision space is too large or complex for ordinal…

Computer Science and Game Theory · Computer Science 2017-10-03 Brandon Fain , Ashish Goel , Kamesh Munagala , Sukolsak Sakshuwong

Social graphs can be easily extracted from Online Social Networks. However these networks are getting larger from day to day. Sampling methods used to evaluate graph information cannot accurately extract graph properties. Furthermore Social…

Social and Information Networks · Computer Science 2013-01-17 Giannis Haralabopoulos , Ioannis Anagnostopoulos

We give a probabilistic interpretation of sampling theory of graph signals. To do this, we first define a generative model for the data using a pairwise Gaussian random field (GRF) which depends on the graph. We show that, under certain…

Machine Learning · Computer Science 2015-03-24 Akshay Gadde , Antonio Ortega

Currently, state-of-the-art exploration methods maintain high-resolution map representations in order to optimize exploration goals in each step that maximizes information gain. However, during exploring, those "optimal" selections could…

Robotics · Computer Science 2021-04-01 Fan Yang , Dung-Han Lee , John Keller , Sebastian Scherer

The purpose of this article is to introduce a new iterative algorithm with properties resembling real life bipartite graphs. The algorithm enables us to generate wide range of random bigraphs, which features are determined by a set of…

Artificial Intelligence · Computer Science 2010-11-03 Szymon Chojnacki , Mieczysław Kłopotek

This paper proposes a penalized composite likelihood method for model selection in colored graphical Gaussian models. The method provides a sparse and symmetry-constrained estimator of the precision matrix, and thus conducts model selection…

Methodology · Statistics 2020-04-06 Qiong Li , Xiaoying Sun , Nanwei Wang

Factorization machine (FM) is a prevalent approach to modeling pairwise (second-order) feature interactions when dealing with high-dimensional sparse data. However, on the one hand, FM fails to capture higher-order feature interactions…

Machine Learning · Computer Science 2025-02-24 Shu Wu , Zekun Li , Yunyue Su , Zeyu Cui , Xiaoyu Zhang , Liang Wang

Representation learning is the first step in automating tasks such as research paper recommendation, classification, and retrieval. Due to the accelerating rate of research publication, together with the recognised benefits of…

Digital Libraries · Computer Science 2023-03-22 Eoghan Cunningham , Derek Greene

Processing large complex networks recently attracted considerable interest. Complex graphs are useful in a wide range of applications from technological networks to biological systems like the human brain. Sometimes these networks are…

Data Structures and Algorithms · Computer Science 2019-12-03 Christian Schulz

In the last two decades we are witnessing a huge increase of valuable big data structured in the form of graphs or networks. To apply traditional machine learning and data analytic techniques to such data it is necessary to transform graphs…

Machine Learning · Computer Science 2024-03-22 Aleksandar Tomčić , Miloš Savić , Miloš Radovanović

This study develops a graph search algorithm to find the optimal discrimination path for the binary classification problem. The objective function is defined as the difference of variations between the true positive (TP) and false positive…

Machine Learning · Computer Science 2024-01-10 Qinwu Xu

In this paper, we present two localized graph filtering based methods for interpolating graph signals defined on the vertices of arbitrary graphs from only a partial set of samples. The first method is an extension of previous work on…

Machine Learning · Computer Science 2013-10-11 Sunil K. Narang , Akshay Gadde , Eduard Sanou , Antonio Ortega

We explore the problem of sampling graph signals in scenarios where the graph structure is not predefined and must be inferred from data. In this scenario, existing approaches rely on a two-step process, where a graph is learned first,…

Machine Learning · Computer Science 2024-12-18 Shashank N. Sridhara , Eduardo Pavez , Antonio Ortega

In this paper we consider graph algorithms in models of computation where the space usage (random accessible storage, in addition to the read only input) is sublinear in the number of edges $m$ and the access to input data is constrained.…

Data Structures and Algorithms · Computer Science 2015-04-21 Kook Jin Ahn , Sudipto Guha

When processing high-dimensional datasets, a common pre-processing step is feature selection. Filter-based feature selection algorithms are not tailored to a specific classification method, but rather rank the relevance of each feature with…

Machine Learning · Computer Science 2023-03-06 Shir Friedman , Gonen Singer , Neta Rabin

This article introduces a concept and measure of graph compartmentalization. This new measure allows for principled comparison between graphs of arbitrary structure, unlike existing measures such as graph modularity. The proposed measure is…

Social and Information Networks · Computer Science 2014-08-29 Matthew J. Denny

Hypergraphs are structures that can be decomposed or described; in other words they are recursively countable. Here, we get exact and asymptotic enumeration results on hypergraphs by means of exponential generating functions. The number of…

Discrete Mathematics · Computer Science 2008-06-20 Tsiriniaina Andriamampianina