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Deep learning based approaches are now widely used across biophysics to help automate a variety of tasks including image segmentation, feature selection, and deconvolution. However, the presence of multiple competing deep learning…

Image and Video Processing · Electrical Eng. & Systems 2025-01-31 J Shepard Bryan , Pedro Pessoa , Meyam Tavakoli , Steve Presse

Magnetic resonance imaging (MRI) is critically important for brain mapping in both scientific research and clinical studies. Precise segmentation of brain tumors facilitates clinical diagnosis, evaluations, and surgical planning. Deep…

Image and Video Processing · Electrical Eng. & Systems 2023-05-01 Rui Nian , Guoyao Zhang , Yao Sui , Yuqi Qian , Qiuying Li , Mingzhang Zhao , Jianhui Li , Ali Gholipour , Simon K. Warfield

Deep learning has been shown to produce state of the art results in many tasks in biomedical imaging, especially in segmentation. Moreover, segmentation of the cerebrovascular structure from magnetic resonance angiography is a challenging…

Computer Vision and Pattern Recognition · Computer Science 2018-12-06 Pedro Sanches , Cyril Meyer , Vincent Vigon , Benoît Naegel

Medical image segmentation is an essential prerequisite for developing healthcare systems, especially for disease diagnosis and treatment planning. On various medical image segmentation tasks, the u-shaped architecture, also known as U-Net,…

Computer Vision and Pattern Recognition · Computer Science 2021-02-09 Jieneng Chen , Yongyi Lu , Qihang Yu , Xiangde Luo , Ehsan Adeli , Yan Wang , Le Lu , Alan L. Yuille , Yuyin Zhou

Deep learning has shown great potential for automated medical image segmentation to improve the precision and speed of disease diagnostics. However, the task presents significant difficulties due to variations in the scale, shape, texture,…

Image and Video Processing · Electrical Eng. & Systems 2024-09-06 Shahzaib Iqbal , Tariq M. Khan , Syed S. Naqvi , Asim Naveed , Erik Meijering

This paper proposes a high-precision semantic segmentation method based on an improved TransUNet architecture to address the challenges of complex lesion structures, blurred boundaries, and significant scale variations in skin lesion…

Image and Video Processing · Electrical Eng. & Systems 2025-08-21 Xin Wang , Xiaopei Zhang , Xingang Wang

Recently, the field of 3D medical segmentation has been dominated by deep learning models employing Convolutional Neural Networks (CNNs) and Transformer-based architectures, each with their distinctive strengths and limitations. CNNs are…

Computer Vision and Pattern Recognition · Computer Science 2024-10-22 Luca Lumetti , Vittorio Pipoli , Kevin Marchesini , Elisa Ficarra , Costantino Grana , Federico Bolelli

Deep convolutional neural networks (CNNs) have been intensively used for multi-class segmentation of data from different modalities and achieved state-of-the-art performances. However, a common problem when dealing with large, high…

Computer Vision and Pattern Recognition · Computer Science 2018-04-13 Chengjia Wang , Tom MacGillivray , Gillian Macnaught , Guang Yang , David Newby

While convolutional neural networks (CNNs) and vision transformers (ViTs) have advanced medical image segmentation, they face inherent limitations such as local receptive fields in CNNs and high computational complexity in ViTs. This paper…

Image and Video Processing · Electrical Eng. & Systems 2025-04-02 Pooya Ashtari , Shahryar Noei , Fateme Nateghi Haredasht , Jonathan H. Chen , Giuseppe Jurman , Aleksandra Pizurica , Sabine Van Huffel

Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images. We present a convolution neural network (CNN) based deep learning architecture for segmentation of objects in…

Computer Vision and Pattern Recognition · Computer Science 2019-01-24 Shan E Ahmed Raza , Linda Cheung , Muhammad Shaban , Simon Graham , David Epstein , Stella Pelengaris , Michael Khan , Nasir M. Rajpoot

The recent success of Vision Transformers is shaking the long dominance of Convolutional Neural Networks (CNNs) in image recognition for a decade. Specifically, in terms of robustness on out-of-distribution samples, recent research finds…

Computer Vision and Pattern Recognition · Computer Science 2023-03-07 Zeyu Wang , Yutong Bai , Yuyin Zhou , Cihang Xie

With the rapid development of deep learning, CNN-based U-shaped networks have succeeded in medical image segmentation and are widely applied for various tasks. However, their limitations in capturing global features hinder their performance…

Image and Video Processing · Electrical Eng. & Systems 2024-10-22 Xin Li , Wenhui Zhu , Xuanzhao Dong , Oana M. Dumitrascu , Yalin Wang

Automated medical image segmentation is becoming increasingly crucial to modern clinical practice, driven by the growing demand for precise diagnosis, the push towards personalized treatment plans, and the advancements in machine learning…

Image and Video Processing · Electrical Eng. & Systems 2023-11-13 Tan-Hanh Pham , Xianqi Li , Kim-Doang Nguyen

In recent years, significant advancements have been made in deep learning for medical image segmentation, particularly with convolutional neural networks (CNNs) and transformer models. However, CNNs face limitations in capturing long-range…

Image and Video Processing · Electrical Eng. & Systems 2025-10-28 Juntao Jiang , Jiangning Zhang , Weixuan Liu , Muxuan Gao , Xiaobin Hu , Zhucun Xue , Yong Liu , Shuicheng Yan

This paper analyzes the use of 3D Convolutional Neural Networks for brain tumor segmentation in MR images. We address the problem using three different architectures that combine fine and coarse features to obtain the final segmentation. We…

Machine Learning · Statistics 2017-05-24 Adrià Casamitjana , Santi Puch , Asier Aduriz , Verónica Vilaplana

In recent years, 3D convolutional neural networks have become the dominant approach for volumetric medical image segmentation. However, compared to their 2D counterparts, 3D networks introduce substantially more training parameters and…

Image and Video Processing · Electrical Eng. & Systems 2022-06-01 Yuan Wang , Laura Blackie , Irene Miguel-Aliaga , Wenjia Bai

Convolutional Neural Networks (CNNs) have shown remarkable progress in medical image segmentation. However, lesion segmentation remains a challenge to state-of-the-art CNN-based algorithms due to the variance in scales and shapes. On the…

Image and Video Processing · Electrical Eng. & Systems 2023-05-31 Yanwen Li , Luyang Luo , Huangjing Lin , Pheng-Ann Heng , Hao Chen

Automatic medical image segmentation has made great progress benefit from the development of deep learning. However, most existing methods are based on convolutional neural networks (CNNs), which fail to build long-range dependencies and…

Computer Vision and Pattern Recognition · Computer Science 2021-06-15 Ailiang Lin , Bingzhi Chen , Jiayu Xu , Zheng Zhang , Guangming Lu

While large models have achieved significant progress in computer vision, challenges such as optimization complexity, the intricacy of transformer architectures, computational constraints, and practical application demands highlight the…

Image and Video Processing · Electrical Eng. & Systems 2025-11-03 Juntao Jiang , Mengmeng Wang , Huizhong Tian , Lingbo Cheng , Yong Liu

The convolution operation is a central building block of neural network architectures widely used in computer vision. The size of the convolution kernels determines both the expressiveness of convolutional neural networks (CNN), as well as…

Image and Video Processing · Electrical Eng. & Systems 2022-10-10 Tianyu Ma , Adrian V. Dalca , Mert R. Sabuncu