English
Related papers

Related papers: PoseBusters: AI-based docking methods fail to gene…

200 papers

Real-world robotics applications demand object pose estimation methods that work reliably across a variety of scenarios. Modern learning-based approaches require large labeled datasets and tend to perform poorly outside the training domain.…

Computer Vision and Pattern Recognition · Computer Science 2023-05-15 Jingnan Shi , Rajat Talak , Dominic Maggio , Luca Carlone

Modeling the interaction between proteins and ligands and accurately predicting their binding structures is a critical yet challenging task in drug discovery. Recent advancements in deep learning have shown promise in addressing this…

Machine Learning · Computer Science 2024-01-10 Qizhi Pei , Kaiyuan Gao , Lijun Wu , Jinhua Zhu , Yingce Xia , Shufang Xie , Tao Qin , Kun He , Tie-Yan Liu , Rui Yan

Monocular depth estimation has improved significantly in recent years, driven by increasingly powerful models and large-scale training data. Predicted depth is increasingly used as an input signal for downstream tasks such as…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Viktor Kocur , Sithu Aung , Gabrielle Flood , Yaqing Ding , Lukas Bujnak , Torsten Sattler , Zuzana Kukelova

An automated robotic system needs to be as robust as possible and fail-safe in general while having relatively high precision and repeatability. Although deep learning-based methods are becoming research standard on how to approach 3D scan…

Computer Vision and Pattern Recognition · Computer Science 2023-10-04 Lukáš Gajdošech , Viktor Kocur , Martin Stuchlík , Lukáš Hudec , Martin Madaras

Molecular docking is a key task in computational biology that has attracted increasing interest from the machine learning community. While existing methods have achieved success, they generally treat each protein-ligand pair in isolation.…

Biomolecules · Quantitative Biology 2025-01-28 Jiaqi Guan , Jiahan Li , Xiangxin Zhou , Xingang Peng , Sheng Wang , Yunan Luo , Jian Peng , Jianzhu Ma

Proteins perform critical processes in all living systems: converting solar energy into chemical energy, replicating DNA, as the basis of highly performant materials, sensing and much more. While an incredible range of functionality has…

Biomolecules · Quantitative Biology 2021-09-29 Leonardo V. Castorina , Rokas Petrenas , Kartic Subr , Christopher W. Wood

We study multi-dataset training (MDT) for pose estimation, where skeletal heterogeneity presents a unique challenge that existing methods have yet to address. In traditional domains, \eg regression and classification, MDT typically relies…

Computer Vision and Pattern Recognition · Computer Science 2025-05-26 Uyoung Jeong , Jonathan Freer , Seungryul Baek , Hyung Jin Chang , Kwang In Kim

State estimation from measured data is crucial for robotic applications as autonomous systems rely on sensors to capture the motion and localize in the 3D world. Among sensors that are designed for measuring a robot's pose, or for soft…

Robotics · Computer Science 2023-02-28 Jingpei Lu , Fei Liu , Cedric Girerd , Michael C. Yip

Accurate prediction of protein-ligand binding poses is crucial for structure-based drug design, yet existing methods struggle to balance speed, accuracy, and physical plausibility. We introduce Matcha, a novel molecular docking pipeline…

The structure of proteins is the basis for studying protein function and drug design. The emergence of AlphaFold 2 has greatly promoted the prediction of protein 3D structures, and it is of great significance to give an overall and accurate…

Biomolecules · Quantitative Biology 2024-07-02 Wenda Wang , Jiaqi Zhai , He Huang , Xinqi Gong

Advances in deep learning have opened an era of abundant and accurate predicted protein structures; however, similar progress in protein ensembles has remained elusive. This review highlights several recent research directions towards…

Biomolecules · Quantitative Biology 2025-09-23 Bowen Jing , Bonnie Berger , Tommi Jaakkola

The field of protein-ligand pose prediction has seen significant advances in recent years, with machine learning-based methods now being commonly used in lieu of classical docking methods or even to predict all-atom protein-ligand complex…

Biomolecules · Quantitative Biology 2024-10-01 David Errington , Constantin Schneider , Cédric Bouysset , Frédéric A. Dreyer

This work addresses the certification of the local robustness of vision-based two-stage 6D object pose estimation. The two-stage method for object pose estimation achieves superior accuracy by first employing deep neural network-driven…

Computer Vision and Pattern Recognition · Computer Science 2024-08-02 Xusheng Luo , Tianhao Wei , Simin Liu , Ziwei Wang , Luis Mattei-Mendez , Taylor Loper , Joshua Neighbor , Casidhe Hutchison , Changliu Liu

Estimating the pose of an uncooperative spacecraft is an important computer vision problem for enabling the deployment of automatic vision-based systems in orbit, with applications ranging from on-orbit servicing to space debris removal.…

Computer Vision and Pattern Recognition · Computer Science 2023-10-03 Leo Pauly , Wassim Rharbaoui , Carl Shneider , Arunkumar Rathinam , Vincent Gaudilliere , Djamila Aouada

The recent proliferation of fake portrait videos poses direct threats on society, law, and privacy. Believing the fake video of a politician, distributing fake pornographic content of celebrities, fabricating impersonated fake videos as…

Computer Vision and Pattern Recognition · Computer Science 2020-07-21 Umur Aybars Ciftci , Ilke Demir

Understanding protein solubility is essential for their functional applications. Computational methods for predicting protein solubility are crucial for reducing experimental costs and enhancing the efficiency and success rates of protein…

Quantitative Methods · Quantitative Biology 2024-07-01 Yang Tan , Jia Zheng , Liang Hong , Bingxin Zhou

Human pose and shape (HPS) estimation methods achieve remarkable results. However, current HPS benchmarks are mostly designed to test models in scenarios that are similar to the training data. This can lead to critical situations in…

Computer Vision and Pattern Recognition · Computer Science 2023-03-31 Qihao Liu , Adam Kortylewski , Alan Yuille

We present TerraBind, a foundation model for protein-ligand structure and binding affinity prediction that achieves 26-fold faster inference than state-of-the-art methods while improving affinity prediction accuracy by $\sim$20\%. Current…

The viability of a new drug molecule is a time and resource intensive task that makes computer-aided assessments a vital approach to rapid drug discovery. Here we develop a machine learning algorithm, iMiner, that generates novel inhibitor…