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There exist several methods dealing with the reconstruction of rooted phylogenetic networks explaining different evolutionary histories given by rooted binary phylogenetic trees. In practice, however, due to insufficient information of the…

Populations and Evolution · Quantitative Biology 2015-12-18 Benjamin Albrecht

We explore new approaches for finding matrix multiplication algorithms in the commutative setting by adapting the flip graph technique: a method previously shown to be effective for discovering fast algorithms in the non-commutative case.…

Symbolic Computation · Computer Science 2025-06-30 Isaac Wood

The theory of $n$-fold integer programming has been recently emerging as an important tool in parameterized complexity. The input to an $n$-fold integer program (IP) consists of parameter $A$, dimension $n$, and numerical data of binary…

Data Structures and Algorithms · Computer Science 2021-02-25 Martin Koutecký , Asaf Levin , Shmuel Onn

The purpose of this article is to show how the isotropy subgroup of leaf permutations on binary trees can be used to systematically identify tree-informative invariants relevant to models of phylogenetic evolution. In the quartet case, we…

Quantitative Methods · Quantitative Biology 2012-04-24 J G Sumner , P D Jarvis

This work introduces a novel interpretable machine learning method called Mixture of Decision Trees (MoDT). It constitutes a special case of the Mixture of Experts ensemble architecture, which utilizes a linear model as gating function and…

Machine Learning · Computer Science 2022-11-29 Simeon Brüggenjürgen , Nina Schaaf , Pascal Kerschke , Marco F. Huber

We prove convergence with optimal algebraic rates for an adaptive finite element method for nonlinear equations with strongly monotone operator. Unlike prior works, our analysis also includes the iterative and inexact solution of the…

Numerical Analysis · Mathematics 2018-11-27 Gregor Gantner , Alexander Haberl , Dirk Praetorius , Bernhard Stiftner

Integrable differential identities, together with ensemble-specific initial conditions, provide an effective approach for the characterisation of relevant observables and state functions in random matrix theory. We develop this approach for…

Mathematical Physics · Physics 2026-05-04 Costanza Benassi , Marta Dell'Atti , Antonio Moro

In many applications involving binary variables, only pairwise dependence measures, such as correlations, are available. However, for multi-way tables involving more than two variables, these quantities do not uniquely determine the joint…

Methodology · Statistics 2026-01-13 Roberto Fontana , Elisa Perrone , Fabio Rapallo

We present logically based methods for constructing XP and FPT graph algorithms, parametrized by tree-width or clique-width. We will use fly-automata introduced in a previous article. They make possible to check properties that are not…

Logic in Computer Science · Computer Science 2015-12-21 Bruno Courcelle , Irène Durand

This paper analyses the feasible sets structure of general mixed integer linear programs (MIPs) and its relationship with the existence of a finite cardinality test set which can be applied in augmentation algorithms. We derive and…

Optimization and Control · Mathematics 2025-09-30 Justo Puerto , Jose A. Ruiz-Alba

A decision tree is commonly restricted to use a single hyperplane to split the covariate space at each of its internal nodes. It often requires a large number of nodes to achieve high accuracy, hurting its interpretability. In this paper,…

Machine Learning · Computer Science 2020-10-23 Mohammadreza Armandpour , Mingyuan Zhou

A constructive version of the Frobenius integrability theorem -- that can be programmed effectively -- is given. This is used in computing invariants of groups of low ranks and recover examples from a recent paper of Boyko, Patera and…

Differential Geometry · Mathematics 2015-12-09 H. Azad , I. Biswas , R. Ghanam , M. T. Mustafa

This paper studies the iteration-complexity of new regularized hybrid proximal extragradient (HPE)-type methods for solving monotone inclusion problems (MIPs). The new (regularized HPE-type) methods essentially consist of instances of the…

Optimization and Control · Mathematics 2015-09-09 Maicon Marques Alves , Renato D. C. Monteiro , Benar F. Svaiter

In a recent paper we have suggested that the finite temperature density matrix can be computed efficiently by a combination of polynomial expansion and iterative inversion techniques. We present here significant improvements over this…

Materials Science · Physics 2010-10-19 Michele Ceriotti , Thomas D. Kühne , Michele Parrinello

For a multivariate stationary process, we develop explicit representations for the finite predictor coefficient matrices, the finite prediction error covariance matrices and the partial autocorrelation function (PACF) in terms of the…

Probability · Mathematics 2016-09-05 Akihiko Inoue , Yukio Kasahara , Mohsen Pourahmadi

We consider the problem of interpolating a sparse multivariate polynomial over a finite field, represented with a black box. Building on the algorithm of Ben-Or and Tiwari for interpolating polynomials over rings with characteristic zero,…

Symbolic Computation · Computer Science 2020-02-11 Qiao-Long Huang

This paper presents the design of a novel distributed algorithm d-IRA for the reachability analysis of linear hybrid automata. Recent work on iterative relaxation abstraction (IRA) is leveraged to distribute the computational problem among…

Logic in Computer Science · Computer Science 2007-10-22 Sumit Kumar Jha

Forest automata (FA) have recently been proposed as a tool for shape analysis of complex heap structures. FA encode sets of tree decompositions of heap graphs in the form of tuples of tree automata. In order to allow for representing…

Logic in Computer Science · Computer Science 2013-04-23 Lukas Holik , Ondrej Lengal , Adam Rogalewicz , Jiri Simacek , Tomas Vojnar

Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…

Data Structures and Algorithms · Computer Science 2026-03-24 David Mestel , Steven Chaplick , Steven Kelk , Ruben Meuwese

The advent of enhanced technologies in radio interferometry and the perspective of the SKA telescope bring new challenges in image reconstruction. One of these challenges is the spatio-spectral reconstruction of large (Terabytes) data cubes…

Instrumentation and Methods for Astrophysics · Physics 2016-03-07 Jérémy Deguignet , André Ferrari , David Mary , Chiara Ferrari