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Binary data matrices can represent many types of data such as social networks, votes, or gene expression. In some cases, the analysis of binary matrices can be tackled with nonnegative matrix factorization (NMF), where the observed data…

Machine Learning · Statistics 2020-06-23 Alberto Lumbreras , Louis Filstroff , Cédric Févotte

In this article, we study algorithms for nonnegative matrix factorization (NMF) in various applications involving streaming data. Utilizing the continual nature of the data, we develop a fast two-stage algorithm for highly efficient and…

Optimization and Control · Mathematics 2021-01-22 Ran Gu , Qiang Du , Simon J. L. Billinge

Existing nonnegative matrix factorization methods focus on learning global structure of the data to construct basis and coefficient matrices, which ignores the local structure that commonly exists among data. In this paper, we propose a new…

Machine Learning · Computer Science 2019-07-10 Chong Peng , Zhao Kang , Chenglizhao Chen , Qiang Cheng

Hyperspectral unmixing has been an important technique that estimates a set of endmembers and their corresponding abundances from a hyperspectral image (HSI). Nonnegative matrix factorization (NMF) plays an increasingly significant role in…

Computer Vision and Pattern Recognition · Computer Science 2022-05-23 Xin-Ru Feng , Heng-Chao Li , Rui Wang , Qian Du , Xiuping Jia , Antonio Plaza

Nonnegative Matrix Factorization (NMF) is an important unsupervised learning method to extract meaningful features from data. To address the NMF problem within a polynomial time framework, researchers have introduced a separability…

Machine Learning · Computer Science 2025-01-23 Juefei Chen , Longxiu Huang , Yimin Wei

Non-negative matrix factorization (NMF) is a matrix decomposition problem with applications in unsupervised learning. The general form of this problem (along with many of its variants) is NP-hard in nature. In our work, we explore how this…

Archetypal analysis and non-negative matrix factorization (NMF) are staples in a statisticians toolbox for dimension reduction and exploratory data analysis. We describe a geometric approach to both NMF and archetypal analysis by…

Methodology · Statistics 2015-11-05 Anil Damle , Yuekai Sun

Nonnegative matrix factorization (NMF) based topic modeling methods do not rely on model- or data-assumptions much. However, they are usually formulated as difficult optimization problems, which may suffer from bad local minima and high…

Information Retrieval · Computer Science 2021-02-26 JianYu Wang , Xiao-Lei Zhang

In recent years, semi-supervised multi-view nonnegative matrix factorization (MVNMF) algorithms have achieved promising performances for multi-view clustering. While most of semi-supervised MVNMFs have failed to effectively consider…

Machine Learning · Computer Science 2020-10-27 Guosheng Cui , Ruxin Wang , Dan Wu , Ye Li

Background: Mining gene modules from genomic data is an important step to detect gene members of pathways or other relations such as protein-protein interactions. In this work, we explore the plausibility of detecting gene modules by…

Machine Learning · Computer Science 2017-05-12 YaoGong Zhang , YingJie Xu , Xin Fan , YuXiang Hong , Jiahui Liu , ZhiCheng He , YaLou Huang , MaoQiang Xie

Low-rank matrix factorization (MF) is an important technique in data science. The key idea of MF is that there exists latent structures in the data, by uncovering which we could obtain a compressed representation of the data. By factorizing…

Numerical Analysis · Computer Science 2016-05-09 Yuan Lu , Jie Yang

Recently, nonnegative matrix factorization (NMF) has been widely adopted for community detection, because of its better interpretability. However, the existing NMF-based methods have the following three problems: 1) they directly transform…

Machine Learning · Computer Science 2024-02-15 Yuecheng Li , Jialong Chen , Chuan Chen , Lei Yang , Zibin Zheng

Non-negative matrix factorization (NMF) has proved effective in many clustering and classification tasks. The classic ways to measure the errors between the original and the reconstructed matrix are $l_2$ distance or Kullback-Leibler (KL)…

Computer Vision and Pattern Recognition · Computer Science 2014-05-12 Le Li , Jianjun Yang , Kaili Zhao , Yang Xu , Honggang Zhang , Zhuoyi Fan

Non-negative Matrix Factorization (NMF) is a popular tool for data exploration. Bayesian NMF promises to also characterize uncertainty in the factorization. Unfortunately, current inference approaches such as MCMC mix slowly and tend to get…

Machine Learning · Statistics 2016-10-28 M. Arjumand Masood , Finale Doshi-Velez

Analysis of reactive-diffusion simulations requires a large number of independent model runs. For each high-fidelity simulation, inputs are varied and the predicted mixing behavior is represented by changes in species concentration. It is…

Computational Engineering, Finance, and Science · Computer Science 2019-07-24 V. V. Vesselinov , M. K. Mudunuru , S. Karra , D. O. Malley , B. S. Alexandrov

Identifying overlapping communities in networks is a challenging task. In this work we present a novel approach to community detection that utilises the Bayesian non-negative matrix factorisation (NMF) model to produce a probabilistic…

Machine Learning · Statistics 2010-09-28 Ioannis Psorakis , Stephen Roberts , Ben Sheldon

Non-negative Matrix Factorization (NMF) has already been applied to learn speaker characterizations from single or non-simultaneous speech for speaker recognition applications. It is also known for its good performance in (blind) source…

Sound · Computer Science 2016-05-02 Jeroen Zegers , Hugo Van hamme

Nonnegative matrix factorization (NMF) is a powerful technique for dimension reduction, extracting latent factors and learning part-based representation. For large datasets, NMF performance depends on some major issues: fast algorithms,…

Optimization and Control · Mathematics 2015-07-01 Duy-Khuong Nguyen , Tu-Bao Ho

The text-critical practice of grouping witnesses into families or texttypes often faces two obstacles: Contamination in the manuscript tradition, and co-dependence in identifying characteristic readings and manuscripts. We introduce…

Machine Learning · Computer Science 2016-02-04 Joey McCollum , Stephen Brown

Nonnegative Matrix Factorization (NMF) is a widely applied technique in the fields of machine learning and data mining. Graph Regularized Non-negative Matrix Factorization (GNMF) is an extension of NMF that incorporates graph regularization…

Machine Learning · Computer Science 2024-03-19 Zhen Wang , Wenwen Min