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A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

Link prediction requires predicting which new links are likely to appear in a graph. Being able to predict unseen links with good accuracy has important applications in several domains such as social media, security, transportation, and…

Social and Information Networks · Computer Science 2020-06-08 Ghadeer Abuoda , Gianmarco De Francisci Morales , Ashraf Aboulnaga

The simplex graph $S(G)$ of a graph $G$ is defined as the graph whose vertices are the cliques of $G$ (including the empty set), with two vertices being adjacent if, as cliques of $G$, they differ in exactly one vertex. Simplex graphs form…

Combinatorics · Mathematics 2025-03-24 Yan-Ting Xie , Shou-Jun Xu

One of the major challenges in applications related to social networks, computational biology, collaboration networks etc., is to efficiently search for similar patterns in their underlying graphs. These graphs are typically noisy and…

Social and Information Networks · Computer Science 2015-12-17 Kanigalpula Samanvi , Naveen Sivadasan

How can we succinctly describe a million-node graph with a few simple sentences? How can we measure the "importance" of a set of discovered subgraphs in a large graph? These are exactly the problems we focus on. Our main ideas are to…

Social and Information Networks · Computer Science 2014-06-16 Danai Koutra , U Kang , Jilles Vreeken , Christos Faloutsos

Graph visualizations have been studied for tasks such as clustering and temporal analysis, but how these visual similarities relate to established graph similarity measures remains unclear. In this paper, we explore the potential of Vision…

Human-Computer Interaction · Computer Science 2025-04-15 Seokweon Jung , Hyeon Jeon , Jeongmin Rhee , Jinwook Seo

Counts of small subgraphs, or graphlet counts, are widely applicable to measure graph similarity. Computing graphlet counts can be computationally expensive and may pose obstacles in network analysis. We study the role of cliques in…

Social and Information Networks · Computer Science 2024-01-09 Anthony Bonato , Zhiyuan Zhang

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

This paper looks at the task of network topology inference, where the goal is to learn an unknown graph from nodal observations. One of the novelties of the approach put forth is the consideration of prior information about the density of…

Signal Processing · Electrical Eng. & Systems 2022-07-12 Samuel Rey , T. Mitchell Roddenberry , Santiago Segarra , Antonio G. Marques

Two graph parameters are said to be coarsely equivalent if they are within constant factors from each other for every graph $G$. Recently, several graph parameters were shown to be coarsely equivalent to tree-length. Recall that the length…

Combinatorics · Mathematics 2025-02-04 Feodor F. Dragan

In this paper, we present a new metric distance for comparing two large graphs to find similarities and differences between them based on one of the most important graph structural properties, which is Node Adjacency Information, for all…

Discrete Mathematics · Computer Science 2022-06-14 Arefe Alikhani , Farzad Didehvar

A number of network structural characteristics have recently been the subject of particularly intense research, including degree distributions, community structure, and various measures of vertex centrality, to mention only a few. Vertices…

Social and Information Networks · Computer Science 2016-03-23 Igor Trpevski , Tamara Dimitrova , Tommy Boshkovski , Ljupco Kocarev

Graph-level contrastive learning, aiming to learn the representations for each graph by contrasting two augmented graphs, has attracted considerable attention. Previous studies usually simply assume that a graph and its augmented graph as a…

Artificial Intelligence · Computer Science 2024-04-15 Yanbei Liu , Yu Zhao , Xiao Wang , Lei Geng , Zhitao Xiao

A wide range of tasks in network analysis, such as clustering network populations or identifying anomalies in temporal graph streams, require a measure of the similarity between two graphs. To provide a meaningful data summary for…

Physics and Society · Physics 2024-10-15 Helcio Felippe , Federico Battiston , Alec Kirkley

In a graph G, cardinality of the smallest ordered set of vertices that distinguishes every element of V (G) is the (vertex) metric dimension of G. Similarly, the cardinality of such a set is the edge metric dimension of G, if it…

Combinatorics · Mathematics 2020-10-21 Jelena Sedlar , Riste Škrekovski

Given a large-scale graph with millions of nodes and edges, how to reveal macro patterns of interest, like cliques, bi-partite cores, stars, and chains? Furthermore, how to visualize such patterns altogether getting insights from the graph…

Social and Information Networks · Computer Science 2016-11-17 Hugo Gualdron , Robson Cordeiro , Jose Rodrigues

The identification of motifs--subgraphs that appear significantly more often in a particular network than in an ensemble of randomized networks--has become a ubiquitous method for uncovering potentially important subunits within networks…

Molecular Networks · Quantitative Biology 2010-08-27 Reid Ginoza , Andrew Mugler

Prior research has shown that human perception of similarity differs from mathematical measures in visual comparison tasks, including those involving directed acyclic graphs. This divergence can lead to missed differences and skepticism…

Human-Computer Interaction · Computer Science 2024-08-31 Kathrin Guckes , Alena Beyer , Margit Pohl , Tatiana von Landesberger

Effectively showing the relationships between objects in a dataset is one of the main tasks in information visualization. Typically there is a well-defined notion of distance between pairs of objects, and traditional approaches such as…

Human-Computer Interaction · Computer Science 2014-04-09 Bahador Saket , Paolo Simonetto , Stephen Kobourov , Katy Borner

We use the line digraph construction to associate an orthogonal matrix with each graph. From this orthogonal matrix, we derive two further matrices. The spectrum of each of these three matrices is considered as a graph invariant. For the…

Quantum Physics · Physics 2007-05-23 David Emms , Edwin R. Hancock , Simone Severini , Richard C. Wilson