Related papers: Biomedical Knowledge Graph Embeddings with Negativ…
Knowledge graphs have emerged as an important model for studying complex multi-relational data. This has given rise to the construction of numerous large scale but incomplete knowledge graphs encoding information extracted from various…
In recent years, there has been a resurgence in methods that use distributed (neural) representations to represent and reason about semantic knowledge for robotics applications. However, while robots often observe previously unknown…
Knowledge Graph Embedding (KGE) techniques are crucial in learning compact representations of entities and relations within a knowledge graph, facilitating efficient reasoning and knowledge discovery. While existing methods typically focus…
Knowledge graph (KG) embedding encodes the entities and relations from a KG into low-dimensional vector spaces to support various applications such as KG completion, question answering, and recommender systems. In real world, knowledge…
The paper utilizes the graph embeddings generated for entities of a large biomedical database to perform link prediction to capture various new relationships among different entities. A novel node similarity measure is proposed that…
Knowledge embeddings (KE) represent a knowledge graph (KG) by embedding entities and relations into continuous vector spaces. Existing methods are mainly structure-based or description-based. Structure-based methods learn representations…
Within clinical, biomedical, and translational science, an increasing number of projects are adopting graphs for knowledge representation. Graph-based data models elucidate the interconnectedness between core biomedical concepts, enable…
Recent advances in Large Language Models (LLMs) have positioned them as a prominent solution for Natural Language Processing tasks. Notably, they can approach these problems in a zero or few-shot manner, thereby eliminating the need for…
Knowledge Graphs (KG) constitute a flexible representation of complex relationships between entities particularly useful for biomedical data. These KG, however, are very sparse with many missing edges (facts) and the visualisation of the…
Knowledge graphs (KGs) have become the standard technology for the representation of factual information in applications such as recommendation engines, search, and question-answering systems. However, the continual updating of KGs, as well…
``Classical'' word embeddings, such as Word2Vec, have been shown to capture the semantics of words based on their distributional properties. However, their ability to represent the different meanings that a word may have is limited. Such…
Open Knowledge Graphs (such as DBpedia, Wikidata, YAGO) have been recognized as the backbone of diverse applications in the field of data mining and information retrieval. Hence, the completeness and correctness of the Knowledge Graphs…
Gene expression datasets offer insights into gene regulation mechanisms, biochemical pathways, and cellular functions. Additionally, comparing gene expression profiles between disease and control patients can deepen the understanding of…
We introduce an approach to discovery informatics that uses so called knowledge graphs as the essential representation structure. Knowledge graph is an umbrella term that subsumes various approaches to tractable representation of large…
Low-dimensional node embeddings play a key role in analyzing graph datasets. However, little work studies exactly what information is encoded by popular embedding methods, and how this information correlates with performance in downstream…
Knowledge graph embedding models (KGEMs) developed for link prediction learn vector representations for entities in a knowledge graph, known as embeddings. A common tacit assumption is the KGE entity similarity assumption, which states that…
Knowledge graph embedding, which projects symbolic entities and relations into continuous vector spaces, is gaining increasing attention. Previous methods allow a single static embedding for each entity or relation, ignoring their intrinsic…
Feature selection in Knowledge Graphs (KGs) are increasingly utilized in diverse domains, including biomedical research, Natural Language Processing (NLP), and personalized recommendation systems. This paper delves into the methodologies…
Knowledge graph completion (KGC) tasks aim to infer missing facts in a knowledge graph (KG) for many knowledge-intensive applications. However, existing embedding-based KGC approaches primarily rely on factual triples, potentially leading…
Knowledge Graph Embeddings (KGEs) support a wide range of downstream tasks over Knowledge Graphs (KGs). In practice, KGs evolve as new entities and facts are added, motivating Continual Knowledge Graph Embedding (CKGE) methods that update…